Protein-coding regions prediction combining similarity searches and conservative evolutionary properties of protein-coding sequences.
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[1] E. Snyder,et al. Identification of coding regions in genomic DNA sequences: an application of dynamic programming and neural networks. , 1993, Nucleic acids research.
[2] David J. States,et al. QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification , 1994, J. Comput. Biol..
[3] Mark Borodovsky,et al. GENMARK: Parallel Gene Recognition for Both DNA Strands , 1993, Comput. Chem..
[4] Chris A. Fields,et al. gm: a practical tool for automating DNA sequence analysis , 1990, Comput. Appl. Biosci..
[5] Martin J. Bishop,et al. Guide to Human Genome Computing , 1994 .
[6] David J. States,et al. Identification of protein coding regions by database similarity search , 1993, Nature Genetics.
[7] M S Gelfand,et al. Computer prediction of the exon-intron structure of mammalian pre-mRNAs. , 1990, Nucleic acids research.
[8] Luciano Milanesi,et al. 10 – Prediction of Human Gene Structure , 1998 .
[9] Jerzy Jurka,et al. Censor - a Program for Identification and Elimination of Repetitive Elements From DNA Sequences , 1996, Computers and Chemistry.
[10] Mikhail S. Gelfand,et al. Prediction of Function in DNA Sequence , 1995, J. Comput. Biol..
[11] V. Solovyev,et al. Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames. , 1994, Nucleic acids research.
[12] Steven Salzberg,et al. Finding Genes in DNA with a Hidden Markov Model , 1997, J. Comput. Biol..
[13] Luciano Milanesi,et al. Analysis of donor splice sites in different eukaryotic organisms , 1997, Journal of Molecular Evolution.
[14] Michael R. Hayden,et al. The prediction of exons through an analysis of spliceable open reading frames , 1992, Nucleic Acids Res..
[15] M H Skolnick,et al. A probabilistic model for detecting coding regions in DNA sequences. , 1994, IMA journal of mathematics applied in medicine and biology.
[16] S. Henikoff,et al. Amino acid substitution matrices from protein blocks. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[17] N L Harris,et al. Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project. , 1990, Methods in enzymology.
[18] E V Koonin,et al. New genes in old sequence: a strategy for finding genes in the bacterial genome. , 1994, Trends in biochemical sciences.
[19] R. Guigó,et al. Evaluation of gene structure prediction programs. , 1996, Genomics.
[20] N. Kolchanov,et al. Somatic hypermutagenesis in immunoglobulin genes. I. Correlation between somatic mutations and repeats. Somatic mutation properties and clonal selection. , 1991, Biochimica et biophysica acta.
[21] Temple F. Smith,et al. Prediction of gene structure. , 1992, Journal of molecular biology.
[22] Luciano Milanesi,et al. Gene structure prediction using information on homologous protein sequence , 1996, Comput. Appl. Biosci..
[23] D. Searls,et al. Gene structure prediction by linguistic methods. , 1994, Genomics.
[24] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[25] J W Fickett,et al. Finding genes by computer: the state of the art. , 1996, Trends in genetics : TIG.
[26] E. Uberbacher,et al. Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[27] S. Karlin,et al. Prediction of complete gene structures in human genomic DNA. , 1997, Journal of molecular biology.
[28] Michael Ruogu Zhang,et al. Identification of protein coding regions in the human genome by quadratic discriminant analysis. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[29] G. Bernardi,et al. The isochore organization of the human genome. , 1989, Annual review of genetics.
[30] Wen-Hsiung Li,et al. Fundamentals of molecular evolution , 1990 .
[31] Alexander E. Kel,et al. GenViewer: A computing tool for protein-coding regions prediction in nucleotide sequences , 1993 .
[32] P. Pevzner,et al. Gene recognition via spliced sequence alignment. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[33] B. Dujon. The yeast genome project: what did we learn? , 1996, Trends in genetics : TIG.
[34] David Haussler,et al. A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA , 1996, ISMB.