Mathematical Modeling and Simulation for Epidemic Models

Mathematical modeling has been important to explore transmission dynamics and construct effective control strategies to prevent the spread of disease. Most simple mathematical model is deterministic model. However, we need to take account into the stochastic model when the system involves the intrinsic fluctuations or randomness. Moreover, stochastic models can capture exactly the dynamics of individuals in a small population. But generally, it is difficult to solve the stochastic system. Since bio-chemical reaction is described according to the law of mass action which is used to construct epidemic model. We derive the explicit formula of the solution in terms of block matrices. We formulate mathematical models for epidemic disease. Then, we apply the stochastic computational methods such as the stochastic simulation algorithm (SSA) and the moment closure method (MCM) to the model. First, we apply the stochastic methods to an disease transmission model with government′s control policies against the 2009 H1N1 influenza in Korea. We investigate the impact of various vaccination and antiviral treatment intervention scenarios to prevent the spread of disease. As the result, it is verified that the earlier vaccination is more effective. Second, we consider the two-strain dengue transmission model with seasonality for sequential infection. Despite of having no autochthonous dengue outbreaks in Korea, the potential risk of dengue transmission in Jeju Island increases. We investigate the possible impacts of the potential outbreak of dengue fever in Jeju Island considering climate change based on Representative Concentration Pathways (RCP) scenarios and the migration of infected international travel. Finally, if there are a small number of cases at the initial stage of the epidemic. Infection processes occur randomly. Transmission dynamics involve the probabilistic properties in the system. Therefore, stochastic model provides more accurate predictions. We compare the dynamics of epidemic outbreaks quantitatively under stochastic and deterministic models. We investigate that as the initial number of infectives increases, the difference between the deterministic and stochastic solutions decreases.

[1]  Tom Britton,et al.  Stochastic epidemic models: a survey. , 2009, Mathematical biosciences.

[2]  B. Alto,et al.  Temperature and dengue virus infection in mosquitoes: independent effects on the immature and adult stages. , 2013, The American journal of tropical medicine and hygiene.

[3]  Kendrick,et al.  Applications of Mathematics to Medical Problems , 1925, Proceedings of the Edinburgh Mathematical Society.

[4]  Hong Qian,et al.  Single-molecule enzymology: stochastic Michaelis-Menten kinetics. , 2002, Biophysical chemistry.

[5]  Nizar Marcus,et al.  Application of optimal control to the epidemiology of malaria , 2012 .

[6]  Abraham J. Arenas,et al.  An exact global solution for the classical SIRS epidemic model , 2010 .

[7]  Hamed Yarmand,et al.  Analytic solution of the susceptible-infective epidemic model with state-dependent contact rates and different intervention policies , 2013, Simul..

[8]  H G Solari,et al.  Stochastic eco-epidemiological model of dengue disease transmission by Aedes aegypti mosquito. , 2010, Mathematical biosciences.

[9]  L. Allen,et al.  Comparison of deterministic and stochastic SIS and SIR models in discrete time. , 2000, Mathematical biosciences.

[10]  J A Jacquez,et al.  Reproduction numbers and thresholds in stochastic epidemic models. I. Homogeneous populations. , 1991, Mathematical biosciences.

[12]  Edy Soewono,et al.  An optimal control problem arising from a dengue disease transmission model. , 2013, Mathematical biosciences.

[13]  Niel Hens,et al.  A simple periodic-forced model for dengue fitted to incidence data in Singapore. , 2013, Mathematical biosciences.

[14]  Michael Y. Li,et al.  Global Stability in Some Seir Epidemic Models , 2002 .

[15]  Yanzhao Cao,et al.  Analysis of stochastic vector-host epidemic model with direct transmission , 2016 .

[16]  D. Gillespie A General Method for Numerically Simulating the Stochastic Time Evolution of Coupled Chemical Reactions , 1976 .

[17]  B. Benjamin,et al.  The population census , 2021, Demographic Analysis.

[18]  David F. Percy,et al.  Vector-borne infectious disease mapping with stochastic difference equations: an analysis of dengue disease in Malaysia , 2012 .

[19]  T. Kurtz Limit theorems for sequences of jump Markov processes approximating ordinary differential processes , 1971, Journal of Applied Probability.

[20]  M. S. Bartlett,et al.  Some Evolutionary Stochastic Processes , 1949 .

[21]  K. Mengersen,et al.  Climate change and dengue: a critical and systematic review of quantitative modelling approaches , 2014, BMC Infectious Diseases.

[22]  Krešimir Josić,et al.  Reduced models of networks of coupled enzymatic reactions. , 2011, Journal of theoretical biology.

[23]  Nico Stollenwerk,et al.  Analysis of an asymmetric two-strain dengue model. , 2014, Mathematical biosciences.

[24]  Kun Hu,et al.  Modeling the Dynamics of Dengue Fever , 2013, SBP.

[25]  W. Chinviriyasit,et al.  Dengue Fever with Two Strains in Thailand , 2014 .

[26]  S. Halstead,et al.  A prospective seroepidemiologic study on dengue in children four to nine years of age in Yogyakarta, Indonesia I. studies in 1995-1996. , 1999, The American journal of tropical medicine and hygiene.

[27]  T. Kurtz Solutions of ordinary differential equations as limits of pure jump markov processes , 1970, Journal of Applied Probability.

[28]  Desmond J. Higham,et al.  Modeling and Simulating Chemical Reactions , 2008, SIAM Rev..

[29]  C. Beierkuhnlein,et al.  Extrinsic Incubation Period of Dengue: Knowledge, Backlog, and Applications of Temperature Dependence , 2013, PLoS neglected tropical diseases.

[30]  Simon Cauchemez,et al.  Managing and reducing uncertainty in an emerging influenza pandemic. , 2009, The New England journal of medicine.

[31]  Ji Hun Shin,et al.  International travel of Korean children and Dengue fever: A single institutional analysis , 2010, Korean journal of pediatrics.

[32]  Hyun Mo Yang,et al.  Follow up estimation of Aedes aegypti entomological parameters and mathematical modellings , 2011, Biosyst..

[33]  Chang Hyeong Lee,et al.  A moment closure method for stochastic reaction networks. , 2009, The Journal of chemical physics.

[34]  F. Brauer,et al.  Simple models for containment of a pandemic , 2006, Journal of The Royal Society Interface.

[35]  Chang Hyeong Lee,et al.  An Analytic Approach to A Stochastic Enzyme Kinetic Model , 2015 .

[36]  Pejman Rohani,et al.  Ecological and immunological determinants of dengue epidemics. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[37]  D. Gillespie The chemical Langevin equation , 2000 .

[38]  Gábor Lente,et al.  Stochastic mapping of the Michaelis-Menten mechanism. , 2012, The Journal of chemical physics.

[39]  L. Allen,et al.  Extinction thresholds in deterministic and stochastic epidemic models , 2012, Journal of biological dynamics.

[40]  M. Han,et al.  Comparison of the Epidemiological Aspects of Imported Dengue Cases between Korea and Japan, 2006–2010 , 2015, Osong public health and research perspectives.

[41]  David G Kendall,et al.  Deterministic and Stochastic Epidemics in Closed Populations , 1956 .

[42]  B. Parlett,et al.  Multiple representations to compute orthogonal eigenvectors of symmetric tridiagonal matrices , 2004 .

[43]  Chang Hyeong Lee,et al.  A reduction method for multiple time scale stochastic reaction networks , 2009 .

[44]  Chang Hyeong Lee,et al.  An analytical approach to solutions of master equations for stochastic nonlinear reactions , 2012, Journal of Mathematical Chemistry.

[45]  Abhishek Kumar,et al.  The seasonal reproduction number of dengue fever: impacts of climate on transmission , 2015, PeerJ.

[46]  Eter,et al.  From exact stochastic to mean-field ODE models : a new approach to prove convergence results , 2012 .

[47]  J. H. Wilkinson Calculation of the eigenvectors of a symmetric tridiagonal matrix by inverse iteration , 1962 .

[48]  L. Wahl,et al.  Perspectives on the basic reproductive ratio , 2005, Journal of The Royal Society Interface.

[49]  Julien Arino,et al.  A model for influenza with vaccination and antiviral treatment. , 2008, Journal of theoretical biology.

[50]  Jeehyun Lee,et al.  [Mathematical modeling of the novel influenza A (H1N1) virus and evaluation of the epidemic response strategies in the Republic of Korea]. , 2010, Journal of preventive medicine and public health = Yebang Uihakhoe chi.

[51]  A. Wayne Wymore,et al.  A mathematical theory of systems engineering--the elements , 1967 .

[52]  M. Khammash,et al.  The finite state projection algorithm for the solution of the chemical master equation. , 2006, The Journal of chemical physics.

[53]  H M Yang,et al.  Assessing the effects of temperature on the population of Aedes aegypti, the vector of dengue , 2009, Epidemiology and Infection.

[54]  Alun L Lloyd,et al.  Estimating variability in models for recurrent epidemics: assessing the use of moment closure techniques. , 2004, Theoretical population biology.

[55]  D. Gillespie Approximate accelerated stochastic simulation of chemically reacting systems , 2001 .

[56]  Fourier analysis applied to SPDEs , 1996 .

[57]  Hyojung Lee,et al.  Stochastic methods for epidemic models: An application to the 2009 H1N1 influenza outbreak in Korea , 2016, Appl. Math. Comput..

[58]  M. Thattai,et al.  Intrinsic noise in gene regulatory networks , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[59]  Deng-Chyang Wu,et al.  Large Dengue virus type 1 outbreak in Taiwan , 2015, Emerging Microbes and Infections.

[60]  Joacim Rocklöv,et al.  Vectorial Capacity of Aedes aegypti: Effects of Temperature and Implications for Global Dengue Epidemic Potential , 2014, PloS one.

[61]  Mei-Jie Zhang,et al.  Modeling cumulative incidence function for competing risks data , 2008, Expert review of clinical pharmacology.

[62]  L. P. Lounibos,et al.  Spread of the tiger: global risk of invasion by the mosquito Aedes albopictus. , 2007, Vector borne and zoonotic diseases.

[63]  E. Loh,et al.  Consecutive large dengue outbreaks in Taiwan in 2014–2015 , 2016, Emerging microbes & infections.

[64]  P. Swain,et al.  Stochastic Gene Expression in a Single Cell , 2002, Science.

[65]  J. Tóth,et al.  A full stochastic description of the Michaelis-Menten reaction for small systems. , 1977, Acta biochimica et biophysica; Academiae Scientiarum Hungaricae.

[66]  Maria Glória Teixeira,et al.  Epidemiological Trends of Dengue Disease in Brazil (2000–2010): A Systematic Literature Search and Analysis , 2013, PLoS neglected tropical diseases.

[67]  Szu-Chieh Chen,et al.  Lagged temperature effect with mosquito transmission potential explains dengue variability in southern Taiwan: insights from a statistical analysis. , 2010, The Science of the total environment.

[68]  Delfim F. M. Torres,et al.  Sensitivity Analysis in a Dengue Epidemiological Model , 2013, 1307.0202.

[69]  N. Ferguson,et al.  The effect of antibody-dependent enhancement on the transmission dynamics and persistence of multiple-strain pathogens. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[70]  J. Watmough,et al.  Reproduction numbers and sub-threshold endemic equilibria for compartmental models of disease transmission. , 2002, Mathematical biosciences.

[71]  D. A. Mcquarrie Stochastic approach to chemical kinetics , 1967, Journal of Applied Probability.

[72]  Szu-Chieh Chen,et al.  Modeling the transmission dynamics of dengue fever: implications of temperature effects. , 2012, The Science of the total environment.

[73]  Petter Holme,et al.  The Effect of Disease-Induced Mortality on Structural Network Properties , 2013, PloS one.

[74]  D. Gillespie Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .

[75]  W. Choi,et al.  [The evaluation of policies on 2009 influenza pandemic in Korea]. , 2010, Journal of preventive medicine and public health = Yebang Uihakhoe chi.

[76]  Holly Gaff,et al.  An age-structured model for the spread of epidemic cholera: Analysis and simulation , 2011 .

[77]  Julien Arino,et al.  A final size relation for epidemic models. , 2007, Mathematical biosciences and engineering : MBE.

[78]  W. O. Kermack,et al.  A contribution to the mathematical theory of epidemics , 1927 .

[79]  Hirofumi Ishikawa,et al.  A dengue transmission model in Thailand considering sequential infections with all four serotypes. , 2009, Journal of infection in developing countries.

[80]  Michael Y. Li,et al.  Impacts of migration and immigration on disease transmission dynamics in heterogeneous populations , 2012 .

[81]  P J Staff A stochastic development of the reversible Michaelis-Menten mechanism. , 1970, Journal of theoretical biology.

[82]  Khalid Hattaf,et al.  Partial Differential Equations of an Epidemic Model with Spatial Diffusion , 2014 .

[83]  A. Boutayeb,et al.  A model of dengue fever , 2003, Biomedical engineering online.

[84]  A review of mathematical models and strategies for Pandemic Influenza Control. , 2008 .

[85]  B. Adams,et al.  How important is vertical transmission in mosquitoes for the persistence of dengue? Insights from a mathematical model. , 2010, Epidemics.

[86]  John T. Workman,et al.  Optimal Control Applied to Biological Models , 2007 .

[87]  G. Gibson,et al.  Novel moment closure approximations in stochastic epidemics , 2005, Bulletin of mathematical biology.

[88]  Su Hyun Lee,et al.  The Effects of Climate Change and Globalization on Mosquito Vectors: Evidence from Jeju Island, South Korea on the Potential for Asian Tiger Mosquito (Aedes albopictus) Influxes and Survival from Vietnam Rather Than Japan , 2013, PloS one.