A continuum approximation to an off-lattice individual-cell based model of cell migration and adhesion.
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[1] Massimo Fornasier,et al. Particle, kinetic, and hydrodynamic models of swarming , 2010 .
[2] Gary R. Mirams,et al. A hybrid approach to multi-scale modelling of cancer , 2010, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[3] M. Alber,et al. Macroscopic model of self-propelled bacteria swarming with regular reversals. , 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.
[4] P. Rørth,et al. Collective cell migration. , 2009, Annual review of cell and developmental biology.
[5] K. Kendall,et al. Surface energy and the contact of elastic solids , 1971, Proceedings of the Royal Society of London. A. Mathematical and Physical Sciences.
[6] James D. Murray,et al. Spatial models and biomedical applications , 2003 .
[7] Martin Burger,et al. Large time behavior of nonlocal aggregation models with nonlinear diffusion , 2008, Networks Heterog. Media.
[8] P. Friedl,et al. Collective cell migration in morphogenesis, regeneration and cancer , 2009, Nature Reviews Molecular Cell Biology.
[9] J. Linnett,et al. Quantum mechanics , 1975, Nature.
[10] Andreas Deutsch,et al. Cellular Automaton Modeling of Biological Pattern Formation - Characterization, Applications, and Analysis , 2005, Modeling and simulation in science, engineering and technology.
[11] Kevin J Painter,et al. The impact of adhesion on cellular invasion processes in cancer and development. , 2010, Journal of theoretical biology.
[12] Torbjörn Lundh,et al. Cellular Automaton Modeling of Biological Pattern Formation: Characterization, Applications, and Analysis Authors: Andreas Deutsch and Sabine Dormann, Birkhäuser, 2005, XXVI, 334 p., 131 illus., Hardcover. ISBN:0-8176-4281-1, List Price: $89.95 , 2007, Genetic Programming and Evolvable Machines.
[13] E. Platen. An introduction to numerical methods for stochastic differential equations , 1999, Acta Numerica.
[14] Vicsek,et al. Novel type of phase transition in a system of self-driven particles. , 1995, Physical review letters.
[15] M. Loeffler,et al. Cell migration and organization in the intestinal crypt using a lattice‐free model , 2001, Cell proliferation.
[16] Matthew J Simpson,et al. Mean-field descriptions of collective migration with strong adhesion. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.
[17] P. Friedl,et al. Tumour-cell invasion and migration: diversity and escape mechanisms , 2003, Nature Reviews Cancer.
[18] Matthew J Simpson,et al. Migration of breast cancer cells: understanding the roles of volume exclusion and cell-to-cell adhesion. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.
[19] Peter T. Cummings,et al. An off-lattice hybrid discrete-continuum model of tumor growth and invasion. , 2010, Biophysical journal.
[20] J. W. Thomas. Numerical Partial Differential Equations: Finite Difference Methods , 1995 .
[21] Mark Alber,et al. Macroscopic dynamics of biological cells interacting via chemotaxis and direct contact. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.
[22] Chuan Xue,et al. The Mathematical Analysis of Biological Aggregation and Dispersal: Progress, Problems and Perspectives , 2013 .
[23] A. Singer,et al. Maximum entropy formulation of the Kirkwood superposition approximation. , 2004, The Journal of chemical physics.
[24] G. Verghese,et al. Mass fluctuation kinetics: capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations. , 2007, The Journal of chemical physics.
[25] Christopher R. Sweet,et al. Modelling platelet–blood flow interaction using the subcellular element Langevin method , 2011, Journal of The Royal Society Interface.
[26] J. Schwartz,et al. Theory of Self-Reproducing Automata , 1967 .
[27] S. Schnell,et al. A systematic investigation of the rate laws valid in intracellular environments. , 2006, Biophysical chemistry.
[28] Philip K Maini,et al. Classifying general nonlinear force laws in cell-based models via the continuum limit. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.
[29] K. Painter,et al. A continuum approach to modelling cell-cell adhesion. , 2006, Journal of theoretical biology.
[30] J. Fredberg,et al. Mechanical waves during tissue expansion , 2012, Nature Physics.
[31] Ramon Grima,et al. A study of the accuracy of moment-closure approximations for stochastic chemical kinetics. , 2012, The Journal of chemical physics.
[32] Vincent Hakim,et al. Collective Cell Motion in an Epithelial Sheet Can Be Quantitatively Described by a Stochastic Interacting Particle Model , 2013, PLoS Comput. Biol..
[33] L. Segel,et al. Model for chemotaxis. , 1971, Journal of theoretical biology.
[34] Glazier,et al. Simulation of the differential adhesion driven rearrangement of biological cells. , 1993, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[35] G Mirams,et al. A computational study of discrete mechanical tissue models , 2009, Physical biology.
[36] Philip K Maini,et al. From a discrete to a continuum model of cell dynamics in one dimension. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.
[37] M. Manning,et al. Knowing the Boundaries: Extending the Differential Adhesion Hypothesis in Embryonic Cell Sorting , 2012, Science.
[38] C. Gardiner. Handbook of Stochastic Methods , 1983 .
[39] R. Grima,et al. Many-body theory of chemotactic cell-cell interactions. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.
[40] Thomas Laurent,et al. Local and Global Existence for an Aggregation Equation , 2007 .
[41] 조준학,et al. Growth of human bronchial epithelial cells at an air-liquid interface alters the response to particle exposure , 2013, Particle and Fibre Toxicology.
[42] H. Othmer,et al. A model for individual and collective cell movement in Dictyostelium discoideum. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[43] H. Berg. Random Walks in Biology , 2018 .
[44] T. J. Newman. Modeling multi-cellular systems using sub-cellular elements , 2005 .
[45] Marek Bodnar,et al. Derivation of macroscopic equations for individual cell‐based models: a formal approach , 2005 .
[46] C. Gillespie. Moment-closure approximations for mass-action models. , 2009, IET systems biology.
[47] T. Vicsek,et al. Collective Motion , 1999, physics/9902023.
[48] W. R. Young,et al. Reproductive pair correlations and the clustering of organisms , 2001, Nature.
[49] D. L. Sean McElwain,et al. Travelling waves in a wound healing assay , 2004, Appl. Math. Lett..
[50] P. Mattila,et al. Filopodia: molecular architecture and cellular functions , 2008, Nature Reviews Molecular Cell Biology.
[51] Andrea L. Bertozzi,et al. Finite-time blow-up of L∞-weak solutions of an aggregation equation , 2010 .
[52] Glazier,et al. Simulation of biological cell sorting using a two-dimensional extended Potts model. , 1992, Physical review letters.
[53] José C. M. Mombach. SIMULATION OF EMBRYONIC CELL SELF-ORGANIZATION : A STUDY OF AGGREGATES WITH DIFFERENT CONCENTRATIONS OF CELL TYPES , 1999 .
[54] Christophe Deroulers,et al. Modeling tumor cell migration: From microscopic to macroscopic models. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.
[55] J. McCaskill,et al. Monte Carlo approach to tissue-cell populations. , 1995, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[56] A. Mogilner,et al. Mathematical Biology Mutual Interactions, Potentials, and Individual Distance in a Social Aggregation , 2003 .
[57] J. Sherratt,et al. Intercellular adhesion and cancer invasion: a discrete simulation using the extended Potts model. , 2002, Journal of theoretical biology.
[58] Matthew J Simpson,et al. Corrected mean-field models for spatially dependent advection-diffusion-reaction phenomena. , 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.
[59] Helen M. Byrne,et al. Continuum approximations of individual-based models for epithelial monolayers. , 2010, Mathematical medicine and biology : a journal of the IMA.
[60] J. Kirkwood. Statistical Mechanics of Fluid Mixtures , 1935 .
[61] A. Messiah. Quantum Mechanics , 1961 .
[62] Kevin J Painter,et al. Adding Adhesion to a Chemical Signaling Model for Somite Formation , 2009, Bulletin of mathematical biology.
[63] T. Vicsek,et al. Phase transition in the collective migration of tissue cells: experiment and model. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.
[64] R. Grima. Multiscale modeling of biological pattern formation. , 2008, Current topics in developmental biology.
[65] D. Drasdo,et al. A single-cell-based model of tumor growth in vitro: monolayers and spheroids , 2005, Physical biology.
[66] J. M. Sancho,et al. Noise in spatially extended systems , 1999 .
[67] Matthew J. Simpson,et al. A model for mesoscale patterns in motile populations , 2010 .
[68] K. Painter,et al. Cellular automata and integrodifferential equation models for cell renewal in mosaic tissues , 2010, Journal of The Royal Society Interface.
[69] H M Byrne,et al. Non-local models for the formation of hepatocyte-stellate cell aggregates. , 2010, Journal of theoretical biology.
[70] Mark Alber,et al. Continuous macroscopic limit of a discrete stochastic model for interaction of living cells. , 2007, Physical review letters.
[71] G. M.,et al. A Treatise on the Mathematical Theory of Elasticity , 1906, Nature.
[72] E. Tadmor,et al. From particle to kinetic and hydrodynamic descriptions of flocking , 2008, 0806.2182.
[73] Kevin J Painter,et al. From a discrete to a continuous model of biological cell movement. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.
[74] R. Beddington,et al. Active cell migration drives the unilateral movements of the anterior visceral endoderm , 2004, Development.
[75] Leonard M. Sander,et al. Pattern formation of glioma cells: Effects of adhesion , 2007 .
[76] M. Poujade,et al. Velocity fields in a collectively migrating epithelium. , 2010, Biophysical journal.
[77] H. Chaté,et al. Modeling collective motion: variations on the Vicsek model , 2008 .
[78] David A. Weitz,et al. Physical forces during collective cell migration , 2009 .
[79] P. Friedl,et al. Collective cell migration in morphogenesis and cancer. , 2004, The International journal of developmental biology.
[80] Accurate discretization of advection-diffusion equations. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.
[81] Andrea L. Bertozzi,et al. Finite-Time Blow-up of Solutions of an Aggregation Equation in Rn , 2007 .
[82] Felipe Cucker,et al. Emergent Behavior in Flocks , 2007, IEEE Transactions on Automatic Control.
[83] Jonathan A. Sherratt,et al. Models of epidermal wound healing , 1990, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[84] T. Newman,et al. Modeling cell rheology with the Subcellular Element Model , 2008, Physical biology.