Deinococcusradioresistens sp. nov., a UV and gamma radiation-resistant bacterium isolated from mountain soil

Two Gram-negative, non-motile, short rod-shaped bacterial strains, designated as 8AT and 28A, were isolated from Mount Deogyusan, Jeonbuk Province, South Korea. The isolates were analyzed by a polyphasic approach, revealing variations in their phenotypic characters but high DNA–DNA hybridisation values reciprocally, confirming that they belong to the same species. Both the isolates also showed a high resistance to UV compared with Deinococcus radiodurans, and a gamma-radiation resistance similar to other members of the genus Deinococcus. Phylogenetic analysis with the 16S rRNA gene sequences of closely related species indicated their similarities were below 97 %. Chemotaxonomic data showed the most abundant fatty acids to be C16:1ω7c and C16:0. The strains can be distinguished from closely related species by the production of esterase (C4) and α-galactosidase, and by their ability to assimilate l-alanine, l-histidine and N-acetyl-d-glucosamine. Based on the phenotypic, phylogenetic, and chemotaxonomic data, the isolates represent a novel species of the genus Deinococcus, for which the name Deinococcusradioresistens sp. nov. is proposed. The type strain is 8AT (KEMB 9004-109T = JCM 19777T), and a second strain is 28A (KEMB 9004-113 = JCM 19778).

[1]  W. Fitch Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology , 1971 .

[2]  Erko Stackebrandt,et al.  Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology , 1994 .

[3]  D. Minnikin,et al.  AN INTEGRATED PROCEDURE FOR THE EXTRACTION OF BACTERIAL ISOPRENOID QUINONES AND POLAR LIPIDS , 1984 .

[4]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[5]  Takayuki Ezaki,et al.  Fluorometric Deoxyribonucleic Acid-Deoxyribonucleic Acid Hybridization in Microdilution Wells as an Alternative to Membrane Filter Hybridization in which Radioisotopes Are Used To Determine Genetic Relatedness among Bacterial Strains , 1989 .

[6]  M. Kimura The Neutral Theory of Molecular Evolution: Introduction , 1983 .

[7]  Deinococcus aerolatus sp. nov. and Deinococcus aerophilus sp. nov., isolated from air samples. , 2010, International journal of systematic and evolutionary microbiology.

[8]  J. Felsenstein CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.

[9]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[10]  K. Komagata,et al.  4 Lipid and Cell-Wall Analysis in Bacterial Systematics , 1988 .

[11]  M. Kim,et al.  Deinococcus humi sp. nov., isolated from soil. , 2012, International journal of systematic and evolutionary microbiology.

[12]  Marguerita Sasser,et al.  Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids Technical Note # 101 , 2001 .

[13]  K. Komagata,et al.  Determination of DNA base composition by reversed-phase high-performance liquid chromatography , 1984 .

[14]  A. Hiraishi,et al.  Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection , 1996 .

[15]  P. Gerhardt Manual of methods for general bacteriology. , 1981 .

[16]  W. BROOKST,et al.  Nomenclature for “ Micrococcus radiodurans ” and Other Radiation-Resistant Cocci : Deinococcaceae fam . nov . and Deinococcus gen . nov . , Including Five Species , 2008 .

[17]  Myungjin Lee,et al.  Deinococcus daejeonensis sp. nov., isolated from sludge in a sewage disposal plant. , 2012, International journal of systematic and evolutionary microbiology.

[18]  J. Chun,et al.  Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. , 2012, International journal of systematic and evolutionary microbiology.

[19]  Lawrence G. Wayne,et al.  International Committee on Systematic Bacteriology: Announcement of the Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics , 1988 .

[20]  K. Holsinger The neutral theory of molecular evolution , 2004 .

[21]  Tin-Chun Chu,et al.  Microbiology Laboratory Manual , 2008 .

[22]  W. Whitman,et al.  Precise Measurement of the G+C Content of Deoxyribonucleic Acid by High-Performance Liquid Chromatography , 1989 .

[23]  Don-Hee Park,et al.  Comparative survival analysis of 12 histidine kinase mutants of Deinococcus radiodurans after exposure to DNA-damaging agents , 2013, Bioprocess and Biosystems Engineering.

[24]  Wenjun Li,et al.  Deinococcus yunweiensis sp. nov., a gamma- and UV-radiation-resistant bacterium from China. , 2007, International journal of systematic and evolutionary microbiology.

[25]  T. A. Hall,et al.  BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .

[26]  S. Goodison,et al.  16S ribosomal DNA amplification for phylogenetic study , 1991, Journal of bacteriology.

[27]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.