A genetic reconstruction of the invasion of the calanoid copepod Pseudodiaptomus inopinus across the North American Pacific Coast

[1]  N. Jeffery,et al.  RAD sequencing reveals genomewide divergence between independent invasions of the European green crab (Carcinus maenas) in the Northwest Atlantic , 2017, Ecology and evolution.

[2]  F. Viard,et al.  Anthropogenic transport of species across native ranges: unpredictable genetic and evolutionary consequences , 2016, Biology Letters.

[3]  J. Jensen,et al.  On the importance of skewed offspring distributions and background selection in virus population genetics , 2016, Heredity.

[4]  A. Bucklin,et al.  New view of population genetics of zooplankton: RAD‐seq analysis reveals population structure of the North Atlantic planktonic copepod Centropages typicus , 2016, Molecular ecology.

[5]  Flora Jay,et al.  Goodness-of-fit statistics for approximate Bayesian computation , 2016, 1601.04096.

[6]  N. Perrin,et al.  High-density sex-specific linkage maps of a European tree frog (Hyla arborea) identify the sex chromosome without information on offspring sex , 2015, Heredity.

[7]  Kimberly R. Andrews,et al.  Temporal Stability of Genetic Structure in a Mesopelagic Copepod , 2015, PloS one.

[8]  S. Palumbi,et al.  Transcriptome sequencing reveals both neutral and adaptive genome dynamics in a marine invader , 2015, Molecular ecology.

[9]  L. Bernatchez,et al.  RAD genotyping reveals fine‐scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus) , 2015, Molecular ecology.

[10]  A. Van Wormhoudt,et al.  Seasonal and Cyclical Changes in Genetic Composition of the Marine Intertidal Rock Pool Copepod Tigriopus brevicornis , 2015, Biochemical Genetics.

[11]  G. Rollwagen‐Bollens,et al.  Persistent vs. ephemeral invasions: 8.5 years of zooplankton community dynamics in the Columbia River , 2015 .

[12]  P. Gaffney,et al.  Worldwide phylogeography of the invasive ctenophore Mnemiopsis leidyi (Ctenophora) based on nuclear and mitochondrial DNA data , 2015, Biological Invasions.

[13]  C. Schlötterer,et al.  Sequencing pools of individuals — mining genome-wide polymorphism data without big funding , 2014, Nature Reviews Genetics.

[14]  H. MacIsaac,et al.  Assemblage structure: an overlooked component of human-mediated species movements among freshwater ecosystems , 2014 .

[15]  Derrick E. Wood,et al.  Kraken: ultrafast metagenomic sequence classification using exact alignments , 2014, Genome Biology.

[16]  H. MacIsaac,et al.  Invasion Pathway of the Ctenophore Mnemiopsis leidyi in the Mediterranean Sea , 2013, PloS one.

[17]  Jeffery R. Cordell,et al.  Occurrence characteristics of two sibling species, Pseudodiaptomus inopinus and Pseudodiaptomus poplesia (Copepoda, Calanoida, Pseudodiaptomidae), in the Mankyung River estuary, South Korea , 2013, Zoological Studies.

[18]  Angel Amores,et al.  Stacks: an analysis tool set for population genomics , 2013, Molecular ecology.

[19]  J. Havel,et al.  The invasion history of the exotic freshwater zooplankter Daphnia lumholtzi (Cladocera, Crustacea) in North America: a genetic analysis , 2013, Biological Invasions.

[20]  Heng Li Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM , 2013, 1303.3997.

[21]  O. Honnay,et al.  SNP discovery using Paired‐End RAD‐tag sequencing on pooled genomic DNA of Sisymbrium austriacum (Brassicaceae) , 2013, Molecular ecology resources.

[22]  R. T. Brumfield,et al.  Applications of next-generation sequencing to phylogeography and phylogenetics. , 2013, Molecular phylogenetics and evolution.

[23]  R. Cuhel,et al.  Ecosystem transformations of the Laurentian Great Lake Michigan by nonindigenous biological invaders. , 2013, Annual review of marine science.

[24]  A. Brelsford,et al.  The biogeography of mitochondrial and nuclear discordance in animals , 2012, Molecular ecology.

[25]  Y. Yoon,et al.  A new Pseudodiaptomus (Copepoda, Calanoida) from Korea supported by molecular data , 2012 .

[26]  Faye D. Schilkey,et al.  Genome‐wide association genetics of an adaptive trait in lodgepole pine , 2012, Molecular ecology.

[27]  H. Hoekstra,et al.  Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species , 2012, PloS one.

[28]  Thibaut Jombart,et al.  adegenet 1.3-1: new tools for the analysis of genome-wide SNP data , 2011, Bioinform..

[29]  Robert Kofler,et al.  PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq) , 2011, Bioinform..

[30]  J. Bron,et al.  Observing copepods through a genomic lens , 2011, Frontiers in Zoology.

[31]  Yanhong Dong,et al.  Calanoid copepods assemblages in Pearl River Estuary of China in summer: Relationships between species distribution and environmental variables , 2011 .

[32]  A. Jassby,et al.  Shifts in Zooplankton Community Structure: Implications for Food Web Processes in the Upper San Francisco Estuary , 2011 .

[33]  Katalin Csill'ery,et al.  abc: an R package for approximate Bayesian computation (ABC) , 2011, 1106.2793.

[34]  H. Ueda,et al.  Morphological divergence of Pseudodiaptomus inopinus Burckhardt, 1913 (Copepoda: Calanoida) between the Japan Sea and Pacific coasts of western Japan , 2011 .

[35]  M. Blaxter,et al.  RADSeq: next-generation population genetics. , 2010, Briefings in functional genomics.

[36]  J. Goudet,et al.  Evolution in heterogeneous populations: from migration models to fixation probabilities. , 2010, Theoretical population biology.

[37]  H. Ueda,et al.  Tidal vertical migration of two estuarine copepods: naupliar migration and position-dependent migration , 2010 .

[38]  F. Balloux,et al.  Discriminant analysis of principal components: a new method for the analysis of genetically structured populations , 2010, BMC Genetics.

[39]  H. Ueda,et al.  A new species of Pseudodiaptomus (Copepoda: Calanoida) from Japan, with notes on the closely related P. inopinus Burckhardt, 1913 from Kyushu Island , 2010 .

[40]  Kevin J. Emerson,et al.  Resolving postglacial phylogeography using high-throughput sequencing , 2010, Proceedings of the National Academy of Sciences.

[41]  Arnaud Estoup,et al.  Reconstructing routes of invasion using genetic data: why, how and so what? , 2010, Molecular ecology.

[42]  M. Beaumont,et al.  ABC: a useful Bayesian tool for the analysis of population data. , 2010, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[43]  O. François,et al.  Approximate Bayesian Computation (ABC) in practice. , 2010, Trends in ecology & evolution.

[44]  Jeffery R. Cordell,et al.  Modelling physico-chemical factors affecting occurrences of a non-indigenous planktonic copepod in northeast Pacific estuaries , 2010, Biological Invasions.

[45]  Jeffery R. Cordell,et al.  Relative contributions of domestic and foreign sourced ballast water to propagule pressure in Puget Sound, Washington, USA , 2010 .

[46]  H. Saito,et al.  Horizontal transport of the calanoid copepod Neocalanus in the North Pacific: The influences of the current system and the life history , 2010 .

[47]  I. Duggan,et al.  Invasion, genetic variation and species identity of the calanoid copepod Sinodiaptomus valkanovi , 2010 .

[48]  Sylvain Arlot,et al.  A survey of cross-validation procedures for model selection , 2009, 0907.4728.

[49]  Russell P. Herwig,et al.  Factors influencing densities of non‐indigenous species in the ballast water of ships arriving at ports in Puget Sound, Washington, United States , 2009 .

[50]  O. Floerl,et al.  The importance of transport hubs in stepping‐stone invasions , 2009 .

[51]  J. Provan,et al.  High dispersal potential has maintained long-term population stability in the North Atlantic copepod Calanus finmarchicus , 2009, Proceedings of the Royal Society B: Biological Sciences.

[52]  T. Reusch,et al.  Small effective population sizes in two planktonic freshwater copepod species (Eudiaptomus) with apparently large census sizes , 2008, Journal of evolutionary biology.

[53]  P. Etter,et al.  Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers , 2008, PloS one.

[54]  Jérôme Goudet,et al.  quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation , 2008, Bioinform..

[55]  S. Bollens,et al.  Asian copepods on the move: recent invasions in the Columbia–Snake River system, USA , 2008 .

[56]  Gi-Tae Yeo,et al.  Evaluating the competitiveness of container ports in Korea and China , 2008 .

[57]  C. Lee,et al.  Heterogeneity within the native range: population genetic analyses of sympatric invasive and noninvasive clades of the freshwater invading copepod Eurytemora affinis , 2008, Molecular ecology.

[58]  A. Green,et al.  High dispersal capacity of a broad spectrum of aquatic invertebrates via waterbirds , 2007, Aquatic Sciences.

[59]  T. L. Brown,et al.  Economic Impacts of Zebra Mussels on Drinking Water Treatment and Electric Power Generation Facilities , 2007, Environmental management.

[60]  E. Goetze GLOBAL POPULATION GENETIC STRUCTURE AND BIOGEOGRAPHY OF THE OCEANIC COPEPODS EUCALANUS HYALINUS AND E. SPINIFER , 2005, Evolution; international journal of organic evolution.

[61]  H. MacIsaac,et al.  Invasion genetics of the Eurasian spiny waterflea: evidence for bottlenecks and gene flow using microsatellites , 2005, Molecular ecology.

[62]  J. Goudet HIERFSTAT , a package for R to compute and test hierarchical F -statistics , 2005 .

[63]  D. Pimentel,et al.  Update on the environmental and economic costs associated with alien-invasive species in the United States , 2005 .

[64]  Duncan Knowler,et al.  Reassessing the costs of biological invasion: Mnemiopsis leidyi in the Black sea , 2005 .

[65]  J. Shurin,et al.  Mechanisms, effects, and scales of dispersal in freshwater zooplankton , 2004 .

[66]  L. Excoffier Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite‐island model , 2004, Molecular ecology.

[67]  D. Balding,et al.  Approximate Bayesian computation in population genetics. , 2002, Genetics.

[68]  Jeffery R. Cordell,et al.  Zooplankton invasions: a brief review, plus two case studies from the northeast Pacific Ocean , 2002, Hydrobiologia.

[69]  Henn Ojaveer,et al.  Dispersal and emerging ecological impacts of Ponto-Caspian species in the Laurentian Great Lakes. , 2002 .

[70]  C. Cáceres,et al.  Blowing in the wind: a field test of overland dispersal and colonization by aquatic invertebrates , 2002, Oecologia.

[71]  Wayne W. Carmichael,et al.  Zebra mussel (Dreissena polymorpha) selective filtration promoted toxic Microcystis blooms in Saginaw Bay (Lake Huron) and Lake Erie , 2001 .

[72]  J. Havel,et al.  Zooplankton community structure: the role of dispersal , 2000 .

[73]  Marjorie J. Wonham,et al.  Invasion of Coastal Marine Communities in North America: Apparent Patterns, Processes, and Biases , 2000 .

[74]  J. Searle Phylogeography — The History and Formation of Species , 2000, Heredity.

[75]  T. Shiganova Invasion of the Black Sea by the ctenophore Mnemiopsis leidyi and recent changes in pelagic community structure , 1998 .

[76]  P. Wiebe,et al.  Low mitochondrial diversity and small effective population sizes of the copepods Calanus finmarchicus and Nannocalanus minor: possible impact of climatic variation during recent glaciation. , 1998, The Journal of heredity.

[77]  Kevin S. Cummings,et al.  A Transportation Model Assessment of the Risk to Native Mussel Communities from Zebra Mussel Spread , 1998 .

[78]  D. Padilla,et al.  Geographic spread of exotic species: Ecological lessons and opportunities from the invasion of the zebra mussel Dreissena polymorpha , 1996 .

[79]  T. Nalepa,et al.  ZEBRA MUSSEL INFESTATION OF UNIONID BIVALVES (UNIONIDAE) IN NORTH AMERICA , 1996 .

[80]  R. Burton,et al.  Genetic differentiation and reproductive incompatibility among Baja California populations of the copepod Tigriopus californicus , 1995 .

[81]  D. Altman,et al.  Multiple significance tests: the Bonferroni method , 1995, BMJ.

[82]  J. Geller,et al.  Ecological Roulette: The Global Transport of Nonindigenous Marine Organisms , 1993, Science.

[83]  M. Huntley Temperature-Dependent Production of Marine Copepods: A Global Synthesis , 1992, The American Naturalist.

[84]  Jeffery R. Cordell,et al.  Occurrence Oftheasian Calanoid CopepodPseudodiaptomus Inopinus in the Zooplankton of the Columbia River Estuary , 1992 .

[85]  Ronald W. Griffiths,et al.  Distribution and dispersal of the zebra mussel (Dreissena polymorpha) in the Great Lakes region , 1991 .

[86]  J. Allan Life History Patterns in Zooplankton , 1976, The American Naturalist.

[87]  J. Nacht Strangers In Paradise Impact And Management Of Nonindigenous Species In Florida , 2016 .

[88]  S. Bollens,et al.  Seasonal dynamics of zooplankton in Columbia-Snake River reservoirs, with special emphasis on the invasive copepod Pseudodiaptomus forbesi. , 2015 .

[89]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[90]  G. Rollwagen‐Bollens,et al.  Plankton Assemblage Variability in a River-Dominated Temperate Estuary During Late Spring (High-flow) and Late Summer (Low-flow) Periods , 2014, Estuaries and Coasts.

[91]  Jeffery R. Cordell,et al.  Invasive copepods in the Lower Columbia River Estuary: Seasonal abundance, co-occurrence and potential competition with native copepods , 2012 .

[92]  G. Boxshall,et al.  Global diversity of copepods (Crustacea: Copepoda) in freshwater , 2007, Hydrobiologia.

[93]  A. G. Humes How many copepods? , 2004, Hydrobiologia.

[94]  M. Hellberg,et al.  Genetic assessment of connectivity among marine populations , 2002 .

[95]  Carol Eunmi Lee GLOBAL PHYLOGEOGRAPHY OF A CRYPTIC COPEPOD SPECIES COMPLEX AND REPRODUCTIVE ISOLATION BETWEEN GENETICALLY PROXIMATE “POPULATIONS” , 2000 .

[96]  S. Palumbi Genetic Divergence, Reproductive Isolation, and Marine Speciation , 1994 .

[97]  J. Christy,et al.  TIMING OF LARVAL PRODUCTION AND FLUX OF INVERTEBRATE LARVAE IN A WELL-MIXED ESTUARY , 1982 .