On the complexity of haplotyping a microbial community
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Amanda Clare | Kurt De Grave | Christopher J. Creevey | Leander Schietgat | Samuel M. Nicholls | Wayne Aubrey
[1] Yu Lin,et al. Assembly of long, error-prone reads using repeat graphs , 2018, Nature Biotechnology.
[2] Martin Vingron,et al. Ranbow: A fast and accurate method for polyploid haplotype reconstruction , 2020, PLoS Comput. Biol..
[3] Russell Schwartz,et al. SNPs Problems, Complexity, and Algorithms , 2001, ESA.
[4] Nicola Segata,et al. On the Road to Strain-Resolved Comparative Metagenomics , 2018, mSystems.
[5] P. Pevzner,et al. metaSPAdes: a new versatile metagenomic assembler. , 2017, Genome research.
[6] Michael Snyder,et al. Synthetic long read sequencing reveals the composition and intraspecies diversity of the human microbiome , 2015, Nature Biotechnology.
[7] Shuiquan Tang,et al. Ultra-deep, long-read nanopore sequencing of mock microbial community standards , 2018, bioRxiv.
[8] Benedict Paten,et al. Haplotype-aware diplotyping from noisy long reads , 2019, Genome Biology.
[9] Se-kwon Kim,et al. Research and Application of Marine Microbial Enzymes: Status and Prospects , 2010, Marine drugs.
[10] Sorin Istrail,et al. Haplotype assembly in polyploid genomes and identical by descent shared tracts , 2013, Bioinform..
[12] Leo van Iersel,et al. On the Complexity of Several Haplotyping Problems , 2005, WABI.
[13] Samuel Nicholls. Computational recovery of enzyme haplotypes from a metagenome , 2018 .
[14] Shuiquan Tang,et al. Ultra-deep, long-read nanopore sequencing of mock microbial community standards , 2018 .
[15] Mick Watson,et al. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery , 2019, Nature Biotechnology.
[16] M. Dunn,et al. A human gut bacterial genome and culture collection for improved metagenomic analyses , 2019, Nature Biotechnology.
[17] Sergey Koren,et al. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome , 2019, Nature Biotechnology.
[18] Giuseppe Lancia. Algorithmic approaches for the single individual haplotyping problem , 2016, RAIRO Oper. Res..
[19] Vincent Lombard,et al. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection , 2018, Nature Biotechnology.
[20] Dan He,et al. Efficient algorithms for polyploid haplotype phasing , 2018, BMC Genomics.
[21] P. Bork,et al. Diversity within species: interpreting strains in microbiomes , 2020, Nature Reviews Microbiology.
[22] M. Waterman,et al. The accuracy of DNA sequences: estimating sequence quality. , 1992, Genomics.