Computational intelligence in modeling of biological neurons: A case study of an invertebrate pacemaker neuron

Computational modeling of biological neurons allows for exploration of many parameter combinations and various types of neuronal activity, without requiring a prohibitively large number of “wet” experiments. On the other hand, analysis and biological interpretation of such, often very extensive, databases of models can be difficult. In this article, we present two Computational Intelligence (CI) approaches, based on Artificial Neural Networks (ANN) and Multi-Objective Evolutionary Algorithms (MOEA), that we have successfully applied to the problem of analysis and interpretation of model neuronal data.

[1]  E. Marder,et al.  Computational model of electrically coupled, intrinsically distinct pacemaker neurons. , 2005, Journal of neurophysiology.

[2]  Astrid A. Prinz,et al.  Independent Component Analysis-motivated Approach to Classificatory Decomposition of Cortical Evoked Potentials , 2006, BMC Bioinformatics.

[3]  J. Miller,et al.  Mechanisms underlying pattern generation in lobster stomatogastric ganglion as determined by selective inactivation of identified neurons. II. Oscillatory properties of pyloric neurons. , 1982, Journal of neurophysiology.

[4]  Kalyanmoy Deb,et al.  Muiltiobjective Optimization Using Nondominated Sorting in Genetic Algorithms , 1994, Evolutionary Computation.

[5]  Pablo Moscato,et al.  On Evolution, Search, Optimization, Genetic Algorithms and Martial Arts : Towards Memetic Algorithms , 1989 .

[6]  Jean-Marc Goaillard,et al.  Quantitative expression profiling of identified neurons reveals cell-specific constraints on highly variable levels of gene expression , 2007, Proceedings of the National Academy of Sciences.

[7]  Marco Laumanns,et al.  A unified model for multi-objective evolutionary algorithms with elitism , 2000, Proceedings of the 2000 Congress on Evolutionary Computation. CEC00 (Cat. No.00TH8512).

[8]  Peter Dayan,et al.  Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems , 2001 .

[9]  Astrid A. Prinz,et al.  Hybridization of Independent Component Analysis, Rough Sets, and Multi-Objective Evolutionary Algorithms for Classificatory Decomposition of Cortical Evoked Potentials , 2006, PRIB.

[10]  J. D. Schaffer,et al.  Some experiments in machine learning using vector evaluated genetic algorithms (artificial intelligence, optimization, adaptation, pattern recognition) , 1984 .

[11]  E. Marder,et al.  Similar network activity from disparate circuit parameters , 2004, Nature Neuroscience.

[12]  J. Miller,et al.  Mechanisms underlying pattern generation in lobster stomatogastric ganglion as determined by selective inactivation of identified neurons. IV. Network properties of pyloric system. , 1982, Journal of neurophysiology.

[13]  J. Miller,et al.  Mechanisms underlying pattern generation in lobster stomatogastric ganglion as determined by selective inactivation of identified neurons. I. Pyloric system. , 1980, Journal of neurophysiology.

[14]  R. K. Ursem Multi-objective Optimization using Evolutionary Algorithms , 2009 .

[15]  Astrid A. Prinz,et al.  Hybridization of Rough Setsand Multi-ObjectiveEvolutionary Algorithms forClassificatory SignalDecomposition , 2008 .

[16]  Jorge Golowasch,et al.  Neuromodulators, Not Activity, Control Coordinated Expression of Ionic Currents , 2007, The Journal of Neuroscience.

[17]  A. Dickson On Evolution , 1884, Science.