Reliability and Cost of GMO Detection

[1]  Philippe Corbisier,et al.  Single molecule detection in nanofluidic digital array enables accurate measurement of DNA copy number , 2009, Analytical and bioanalytical chemistry.

[2]  Knut G Berdal,et al.  The modular analytical procedure and validation approach and the units of measurement for genetically modified materials in foods and feeds. , 2004, Journal of AOAC International.

[3]  Arne Holst-Jensen,et al.  A statistical approach for evaluation of PCR results to improve the practical limit of quantification (LOQ) of GMO analyses (SIMQUANT) , 2008 .

[4]  N. Lalam Statistical Inference for Quantitative Polymerase Chain Reaction Using a Hidden Markov Model: A Bayesian Approach , 2007, Statistical applications in genetics and molecular biology.

[5]  M. Burns,et al.  Modelling the limit of detection in real-time quantitative PCR , 2008 .

[6]  E. Anklam,et al.  Analytical challenges: bridging the gap from regulation to enforcement. , 2002, Journal of AOAC International.

[7]  Russell Higuchi,et al.  Kinetic PCR Analysis: Real-time Monitoring of DNA Amplification Reactions , 1993, Bio/Technology.

[8]  P. Corbisier,et al.  A single nucleotide polymorphism (SNP839) in the adh1 reference gene affects the quantitation of genetically modified maize (Zea mays L.). , 2008, Journal of agricultural and food chemistry.

[9]  Yves Bertheau,et al.  Construction of measurement uncertainty profiles for quantitative analysis of genetically modified organisms based on interlaboratory validation data. , 2010, Journal of AOAC International.

[10]  K. Engel,et al.  Quantification of DNA from genetically modified organisms in composite and processed foods , 2006 .

[11]  G. Berben,et al.  Physical degradation of genomic DNA of soybean flours does not impair relative quantification of its transgenic content , 2007 .

[12]  R. Abramson,et al.  Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[13]  R. Zeillinger,et al.  Quantitative detection of reverse transcriptase-PCR products by means of a novel and sensitive DNA stain. , 1995, PCR methods and applications.

[14]  S. Prat,et al.  Development of real-time PCR systems based on SYBR® Green I, Amplifluor™ and TaqMan® technologies for specific quantitative detection of the transgenic maize event GA21 , 2004 .

[15]  C. Fogher,et al.  DNA extraction from olive oil and its use in the identification of the production cultivar , 2003 .

[16]  S. Clarke,et al.  Automation of a fluorescence-based multiplex PCR for the laboratory confirmation of common bacterial pathogens. , 2004, Journal of medical microbiology.

[17]  I. Nazarenko,et al.  Effect of primary and secondary structure of oligodeoxyribonucleotides on the fluorescent properties of conjugated dyes. , 2002, Nucleic acids research.

[18]  G. Berben,et al.  Quantitative determination of Roundup Ready soybean (Glycine max) extracted from highly processed flour , 2005, Analytical and bioanalytical chemistry.

[19]  I. Nazarenko,et al.  A closed tube format for amplification and detection of DNA based on energy transfer. , 1997, Nucleic acids research.

[20]  N. Aarskog,et al.  Real-time quantitative polymerase chain reaction , 2000, Human Genetics.

[21]  H. Akiyama,et al.  Applicability of the quantification of genetically modified organisms to foods processed from maize and soy. , 2005, Journal of agricultural and food chemistry.

[22]  Elke Anklam,et al.  Analytical methods for detection and determination of genetically modified organisms in agricultural crops and plant-derived food products , 2002 .

[23]  S. Prat,et al.  A Specific Real-Time Quantitative PCR Detection System for Event MON810 in Maize YieldGard® Based on the 3′-Transgene Integration Sequence , 2003, Transgenic Research.

[24]  R. Schwenzer,et al.  Implementation of a robotized real-time PCR setup for the use of the Quantifiler™ Human DNA Quantification Kit , 2008 .

[25]  K. Gruden,et al.  Comparison of nine different real-time PCR chemistries for qualitative and quantitative applications in GMO detection , 2010, Analytical and bioanalytical chemistry.

[26]  Poul Nielsen,et al.  LNA (Locked Nucleic Acids): Synthesis of the adenine, cytosine, guanine, 5-methylcytosine, thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition , 1998 .

[27]  K. Gruden,et al.  Detection of genetically modified organisms—closing the gaps , 2009, Nature Biotechnology.

[28]  José Luis La Paz,et al.  Comparison of real-time PCR detection chemistries and cycling modes using Mon810 event-specific assays as model. , 2007, Journal of agricultural and food chemistry.

[29]  Sanjay Tyagi,et al.  Molecular Beacons: Probes that Fluoresce upon Hybridization , 1996, Nature Biotechnology.

[30]  P. Jagers,et al.  Estimation of the PCR efficiency based on a size-dependent modelling of the amplification process , 2005 .

[31]  H. Akiyama,et al.  Comparative studies of the quantification of genetically modified organisms in foods processed from maize and soy using trial producing. , 2005, Journal of agricultural and food chemistry.

[32]  Arne Holst-Jensen,et al.  PCR technology for screening and quantification of genetically modified organisms (GMOs) , 2003, Analytical and bioanalytical chemistry.

[33]  P. Corbisier,et al.  Toward metrological traceability for DNA fragment ratios in GM quantification. 2. Systematic study of parameters influencing the quantitative determination of MON 810 corn by real-time PCR. , 2007, Journal of agricultural and food chemistry.

[34]  Tanja Dreo,et al.  Critical points of DNA quantification by real-time PCR--effects of DNA extraction method and sample matrix on quantification of genetically modified organisms. , 2006, BMC biotechnology.

[35]  K. Gruden,et al.  Comparison of different real-time PCR chemistries and their suitability for detection and quantification of genetically modified organisms , 2008, BMC biotechnology.

[36]  Nelson Marmiroli,et al.  Qualitative and quantitative evaluation of the genomic DNA extracted from GMO and non-GMO foodstuffs with four different extraction methods. , 2004, Journal of agricultural and food chemistry.

[37]  Wei Dong,et al.  GMDD: a database of GMO detection methods , 2008, BMC Bioinformatics.

[38]  M. Moser,et al.  Nucleic acid analysis using an expanded genetic alphabet to quench fluorescence. , 2004, Journal of the American Chemical Society.

[39]  E. Lukhtanov,et al.  3'-minor groove binder-DNA probes increase sequence specificity at PCR extension temperatures. , 2000, Nucleic acids research.

[40]  Kirk M. Ririe,et al.  Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. , 1997, Analytical biochemistry.

[41]  C. Foy,et al.  The applicability of digital PCR for the assessment of detection limits in GMO analysis , 2010 .

[42]  S A Greenspoon,et al.  Automated PCR setup for forensic casework samples using the Normalization Wizard and PCR Setup robotic methods. , 2006, Forensic science international.

[43]  Philipp Weller,et al.  The effect of processing parameters on DNA degradation in food , 2003 .

[44]  Guillaume P. Gruère,et al.  A Review of International Labeling Policies of Genetically Modified Food to Evaluate India's Proposed Rule , 2007 .

[45]  C. Saint,et al.  Demonstration of preferential binding of SYBR Green I to specific DNA fragments in real-time multiplex PCR. , 2003, Nucleic acids research.

[46]  P. Corbisier,et al.  Absolute quantification of genetically modified MON810 maize (Zea mays L.) by digital polymerase chain reaction , 2010, Analytical and bioanalytical chemistry.

[47]  K. Engel,et al.  Distortion of genetically modified organism quantification in processed foods: influence of particle size compositions and heat-induced DNA degradation. , 2005, Journal of agricultural and food chemistry.

[48]  G. Alvarado-Urbina,et al.  Probe amplifier system based on chimeric cycling oligonucleotides. , 1990, BioTechniques.

[49]  M. Mura,et al.  Quantitation using informative zeros (QUIZ): Application for GMO detection and quantification without recourse to certified reference material , 2010 .

[50]  Hans-Ulrich Waiblinger,et al.  A practical approach to screen for authorised and unauthorised genetically modified plants , 2010, Analytical and bioanalytical chemistry.

[51]  Sabrina Gioria,et al.  Toward metrological traceability for DNA fragment ratios in GM quantification. 1. Effect of DNA extraction methods on the quantitative determination of Bt176 corn by real-time PCR. , 2007, Journal of agricultural and food chemistry.

[52]  D. Mitchell,et al.  Sequence specificity of cyclobutane pyrimidine dimers in DNA treated with solar (ultraviolet B) radiation. , 1992, Nucleic acids research.

[53]  K. Arar,et al.  Chimeric LNA/DNA probes as a detection system for real-time PCR. , 2004, Clinical biochemistry.

[54]  J. Peccoud,et al.  Theoretical uncertainty of measurements using quantitative polymerase chain reaction. , 1996, Biophysical journal.

[55]  Peter Bedson,et al.  Analytical molecular biology : quality and validation , 2007 .

[56]  Ramesh Ramakrishnan,et al.  High Throughput Gene Expression Measurement with Real Time PCR in a Microfluidic Dynamic Array , 2008, PloS one.

[57]  C. Ginocchio,et al.  Automation of the BD GeneOhm Methicillin-Resistant Staphylococcus aureus Assay for High-Throughput Screening of Nasal Swab Specimens , 2009, Journal of Clinical Microbiology.

[58]  Yves Bertheau,et al.  EU regulations on the traceability and detection of GMOs: difficulties in interpretation, implementation and compliance , 2007 .

[59]  T. Tengs,et al.  Equal performance of TaqMan, MGB, molecular beacon, and SYBR green-based detection assays in detection and quantification of roundup ready soybean. , 2006, Journal of agricultural and food chemistry.

[60]  Carole A Foy,et al.  Standardisation of data from real-time quantitative PCR methods – evaluation of outliers and comparison of calibration curves , 2005, BMC biotechnology.

[61]  Frank Vitzthum,et al.  Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications. , 2004, Nucleic acids research.

[62]  G. Bao,et al.  Nanostructured Probes for RNA Detection in Living Cells , 2006, Annals of Biomedical Engineering.

[63]  Clive James,et al.  Global status of commercialized biotech/GM crops: 2006. , 2006 .

[64]  J. A. Koburger,et al.  Understanding and Teaching the Most Probable Number Technique , 1975 .

[65]  H. Parkes,et al.  Real-time detection of genetically modified soya using Lightcycler and ABI 7700 platforms with TaqMan, Scorpion, and SYBR Green I chemistries. , 2002, Journal of AOAC International.

[66]  K. G. Berdal,et al.  Roundup Ready® soybean event-specific real-time quantitative PCR assay and estimation of the practical detection and quantification limits in GMO analyses , 2001 .

[67]  M. Hauser,et al.  Evaluation of a homemade SYBR green I reaction mixture for real-time PCR quantification of gene expression. , 2002, BioTechniques.