Predicting brain-age from multimodal imaging data captures cognitive impairment

Abstract The disparity between the chronological age of an individual and their brain‐age measured based on biological information has the potential to offer clinically relevant biomarkers of neurological syndromes that emerge late in the lifespan. While prior brain‐age prediction studies have relied exclusively on either structural or functional brain data, here we investigate how multimodal brain‐imaging data improves age prediction. Using cortical anatomy and whole‐brain functional connectivity on a large adult lifespan sample (N=2354, age 19–82), we found that multimodal data improves brain‐based age prediction, resulting in a mean absolute prediction error of 4.29 years. Furthermore, we found that the discrepancy between predicted age and chronological age captures cognitive impairment. Importantly, the brain‐age measure was robust to confounding effects: head motion did not drive brain‐based age prediction and our models generalized reasonably to an independent dataset acquired at a different site (N=475). Generalization performance was increased by training models on a larger and more heterogeneous dataset. The robustness of multimodal brain‐age prediction to confounds, generalizability across sites, and sensitivity to clinically‐relevant impairments, suggests promising future application to the early prediction of neurocognitive disorders. HighlightsBrain‐based age prediction is improved with multimodal neuroimaging data.Participants with cognitive impairment show increased brain aging.Age prediction models are robust to motion and generalize to independent datasets from other sites.

[1]  Bertrand Thirion,et al.  How machine learning is shaping cognitive , 2014 .

[2]  J. Whitwell,et al.  Alzheimer's disease neuroimaging , 2018, Current opinion in neurology.

[3]  Dimitris Samaras,et al.  Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example , 2016, NeuroImage.

[4]  R. Cameron Craddock,et al.  Clinical applications of the functional connectome , 2013, NeuroImage.

[5]  Nikolaus Weiskopf,et al.  Using high-resolution quantitative mapping of R1 as an index of cortical myelination , 2014, NeuroImage.

[6]  Ian Roberts,et al.  Pathogen and host factors are needed to provoke a systemic host response to gastrointestinal infection of Drosophila larvae by Candida albicans , 2011, Disease Models & Mechanisms.

[7]  Gaël Varoquaux,et al.  Scikit-learn: Machine Learning in Python , 2011, J. Mach. Learn. Res..

[8]  Vijay K. Venkatraman,et al.  Neuroanatomical Assessment of Biological Maturity , 2012, Current Biology.

[9]  Vladimir Fonov,et al.  Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge , 2015, NeuroImage.

[10]  S. Rombouts,et al.  Reduced resting-state brain activity in the "default network" in normal aging. , 2008, Cerebral cortex.

[11]  R Cameron Craddock,et al.  Disease state prediction from resting state functional connectivity , 2009, Magnetic resonance in medicine.

[12]  Lutz Jäncke,et al.  Cortical surface area and cortical thickness demonstrate differential structural asymmetry in auditory-related areas of the human cortex. , 2014, Cerebral cortex.

[13]  Daniel N. Allen,et al.  Trail-Making Test , 2010 .

[14]  M. Greicius Resting-state functional connectivity in neuropsychiatric disorders , 2008, Current opinion in neurology.

[15]  B. Biswal,et al.  The resting brain: unconstrained yet reliable. , 2009, Cerebral cortex.

[16]  Christian Gaser,et al.  Gender-specific impact of personal health parameters on individual brain aging in cognitively unimpaired elderly subjects , 2014, Front. Aging Neurosci..

[17]  Satrajit S. Ghosh,et al.  Prediction as a Humanitarian and Pragmatic Contribution from Human Cognitive Neuroscience , 2015, Neuron.

[18]  Dimitris Samaras,et al.  Deriving robust biomarkers from multi-site resting-state data: An Autism-based example , 2016, bioRxiv.

[19]  Christos Davatzikos,et al.  Accelerated brain aging in schizophrenia and beyond: a neuroanatomical marker of psychiatric disorders. , 2014, Schizophrenia bulletin.

[20]  C. Jack,et al.  Alzheimer's Disease Neuroimaging Initiative , 2008 .

[21]  Christos Davatzikos,et al.  Imaging patterns of brain development and their relationship to cognition. , 2015, Cerebral cortex.

[22]  Satrajit S. Ghosh,et al.  Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python , 2011, Front. Neuroinform..

[23]  Torkel Klingberg,et al.  Structural Maturation and Brain Activity Predict Future Working Memory Capacity during Childhood Development , 2014, The Journal of Neuroscience.

[24]  Thomas G. Dietterich What is machine learning? , 2020, Archives of Disease in Childhood.

[25]  J. Stroop Studies of interference in serial verbal reactions. , 1992 .

[26]  Keith Heberlein,et al.  Imaging human connectomes at the macroscale , 2013, Nature Methods.

[27]  Jean-Baptiste Poline,et al.  Which fMRI clustering gives good brain parcellations? , 2014, Front. Neurosci..

[28]  J. Giedd,et al.  Subtle in‐scanner motion biases automated measurement of brain anatomy from in vivo MRI , 2016, Human brain mapping.

[29]  N. Raz,et al.  Differential Aging of the Brain: Patterns, Cognitive Correlates and Modifiers , 2022 .

[30]  Alan C. Evans,et al.  Multi-level bootstrap analysis of stable clusters in resting-state fMRI , 2009, NeuroImage.

[31]  Mert R. Sabuncu,et al.  The influence of head motion on intrinsic functional connectivity MRI , 2012, NeuroImage.

[32]  J. Morris,et al.  The Consortium to Establish a Registry for Alzheimer's Disease (CERAD). Part XIII. , 1996, Neurology.

[33]  Emily L. Dennis,et al.  Functional Brain Connectivity Using fMRI in Aging and Alzheimer’s Disease , 2014, Neuropsychology Review.

[34]  S. Baron-Cohen,et al.  The "Reading the Mind in the Eyes" Test revised version: a study with normal adults, and adults with Asperger syndrome or high-functioning autism. , 2001, Journal of child psychology and psychiatry, and allied disciplines.

[35]  Alison Purcell,et al.  Greater than the sum of its parts: patient–clinician communication education , 2017, Medical education.

[36]  Ning Yang,et al.  Greater Than the Sum of Its Parts , 2010, IEEE Microwave Magazine.

[37]  M. Greicius,et al.  Greater than the sum of its parts: a review of studies combining structural connectivity and resting-state functional connectivity , 2009, Brain Structure and Function.

[38]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[39]  Richard Wise,et al.  A calibration method for quantitative BOLD fMRI based on hyperoxia , 2007, NeuroImage.

[40]  Stefan Klöppel,et al.  BrainAGE in Mild Cognitive Impaired Patients: Predicting the Conversion to Alzheimer’s Disease , 2013, PloS one.

[41]  H. Vankova Mini Mental State , 2010 .

[42]  Alexander J. Smola,et al.  Support Vector Regression Machines , 1996, NIPS.

[43]  L. Jäncke,et al.  Brain structural trajectories over the adult lifespan , 2012, Human brain mapping.

[44]  Margaret D. King,et al.  The NKI-Rockland Sample: A Model for Accelerating the Pace of Discovery Science in Psychiatry , 2012, Front. Neurosci..

[45]  Eileen Luders,et al.  Estimating brain age using high-resolution pattern recognition: Younger brains in long-term meditation practitioners , 2016, NeuroImage.

[46]  Michael Eickenberg,et al.  Machine learning for neuroimaging with scikit-learn , 2014, Front. Neuroinform..

[47]  Karl J. Friston,et al.  Movement‐Related effects in fMRI time‐series , 1996, Magnetic resonance in medicine.

[48]  Tom M. Mitchell,et al.  Machine learning classifiers and fMRI: A tutorial overview , 2009, NeuroImage.

[49]  A. Treisman,et al.  The Stroop Test: Selective Attention to Colours and Words , 1969, Nature.

[50]  Gaël Varoquaux,et al.  Transmodal Learning of Functional Networks for Alzheimer's Disease Prediction , 2016, IEEE Journal of Selected Topics in Signal Processing.

[51]  Abraham Z. Snyder,et al.  Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion , 2012, NeuroImage.

[52]  Edward T. Bullmore,et al.  Network Scaling Effects in Graph Analytic Studies of Human Resting-State fMRI Data , 2010, Front. Syst. Neurosci..

[53]  Leo Breiman,et al.  Random Forests , 2001, Machine Learning.

[54]  Arno Villringer,et al.  The LIFE-Adult-Study: objectives and design of a population-based cohort study with 10,000 deeply phenotyped adults in Germany , 2015, BMC Public Health.

[55]  Thomas T. Liu,et al.  A component based noise correction method (CompCor) for BOLD and perfusion based fMRI , 2007, NeuroImage.

[56]  R. Adolphs,et al.  Building a Science of Individual Differences from fMRI , 2016, Trends in Cognitive Sciences.

[57]  Robert Leech,et al.  Prediction of brain age suggests accelerated atrophy after traumatic brain injury , 2015, Annals of neurology.

[58]  Jonathan D. Power,et al.  Prediction of Individual Brain Maturity Using fMRI , 2010, Science.

[59]  Frithjof Kruggel,et al.  Near‐infrared spectroscopy can detect brain activity during a color–word matching Stroop task in an event‐related design , 2002, Human brain mapping.

[60]  S. Folstein,et al.  "Mini-mental state". A practical method for grading the cognitive state of patients for the clinician. , 1975, Journal of psychiatric research.

[61]  Y. Stern,et al.  Differences between chronological and brain age are related to education and self-reported physical activity , 2016, Neurobiology of Aging.

[62]  Stefan Klöppel,et al.  Estimating the age of healthy subjects from T1-weighted MRI scans using kernel methods: Exploring the influence of various parameters , 2010, NeuroImage.

[63]  Manfred Berres,et al.  Establishing robust cognitive dimensions for characterization and differentiation of patients with Alzheimer's disease, mild cognitive impairment, frontotemporal dementia and depression , 2013, International journal of geriatric psychiatry.

[64]  Shir Tragash,et al.  reading the mind in the eyes , 2018 .

[65]  Lutz Jäncke,et al.  Reliability and statistical power analysis of cortical and subcortical FreeSurfer metrics in a large sample of healthy elderly , 2015, NeuroImage.

[66]  Simon B. Eickhoff,et al.  An improved framework for confound regression and filtering for control of motion artifact in the preprocessing of resting-state functional connectivity data , 2013, NeuroImage.

[67]  J. Morris,et al.  The Consortium to Establish a Registry for Alzheimer's Disease (CERAD). Part I. Clinical and neuropsychological assesment of Alzheimer's disease , 1989, Neurology.

[68]  Larson J. Hogstrom,et al.  The structure of the cerebral cortex across adult life: age-related patterns of surface area, thickness, and gyrification. , 2013, Cerebral cortex.

[69]  Arno Klein,et al.  A reproducible evaluation of ANTs similarity metric performance in brain image registration , 2011, NeuroImage.

[70]  Bertrand Thirion,et al.  How machine learning is shaping cognitive neuroimaging , 2014, GigaScience.

[71]  Christian Gaser,et al.  Longitudinal Changes in Individual BrainAGE in Healthy Aging, Mild Cognitive Impairment, and Alzheimer’s Disease , 2012 .

[72]  T. Yarkoni,et al.  Choosing Prediction Over Explanation in Psychology: Lessons From Machine Learning , 2017, Perspectives on psychological science : a journal of the Association for Psychological Science.

[73]  L. Westlye,et al.  Differential Longitudinal Changes in Cortical Thickness, Surface Area and Volume across the Adult Life Span: Regions of Accelerating and Decelerating Change , 2014, The Journal of Neuroscience.

[74]  Katherine E. Prater,et al.  Functional connectivity tracks clinical deterioration in Alzheimer's disease , 2012, Neurobiology of Aging.

[75]  G. Lohmann,et al.  Color-Word Matching Stroop Task: Separating Interference and Response Conflict , 2001, NeuroImage.

[76]  M. Dylan Tisdall,et al.  Head motion during MRI acquisition reduces gray matter volume and thickness estimates , 2015, NeuroImage.

[77]  Mark W. Woolrich,et al.  Benefits of multi-modal fusion analysis on a large-scale dataset: Life-span patterns of inter-subject variability in cortical morphometry and white matter microstructure , 2012, NeuroImage.