Towards neural circuit reconstruction with volume electron microscopy techniques

[1]  K. Fujita.  [Two-photon laser scanning fluorescence microscopy]. , 2007, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.

[2]  J. Lippincott-Schwartz,et al.  Imaging Intracellular Fluorescent Proteins at Nanometer Resolution , 2006, Science.

[3]  Mark H Ellisman,et al.  Electron tomography of membrane-bound cellular organelles. , 2006, Annual review of biophysics and biomolecular structure.

[4]  Mark H Ellisman,et al.  Transform-based backprojection for volume reconstruction of large format electron microscope tilt series. , 2006, Journal of structural biology.

[5]  E. Yaksi,et al.  Reconstruction of firing rate changes across neuronal populations by temporally deconvolved Ca2+ imaging , 2006, Nature Methods.

[6]  G. Buzsáki,et al.  Temporal Encoding of Place Sequences by Hippocampal Cell Assemblies , 2006, Neuron.

[7]  D. Chklovskii,et al.  Wiring optimization can relate neuronal structure and function. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[8]  A. Fairén.  Pioneering a golden age of cerebral microcircuits: The births of the combined Golgi–electron microscope methods , 2005, Neuroscience.

[9]  J. Lichtman,et al.  Optical sectioning microscopy , 2005, Nature Methods.

[10]  E. Callaway,et al.  Fine-scale specificity of cortical networks depends on inhibitory cell type and connectivity , 2005, Nature Neuroscience.

[11]  P. J. Sjöström,et al.  Correction: Highly Nonrandom Features of Synaptic Connectivity in Local Cortical Circuits , 2005, PLoS Biology.

[12]  Thomas J Deerinck,et al.  Correlated light and electron microscopic imaging of multiple endogenous proteins using Quantum dots , 2005, Nature Methods.

[13]  David S. Greenberg,et al.  Imaging input and output of neocortical networks in vivo. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[14]  William R Schafer,et al.  Deciphering the Neural and Molecular Mechanisms of C. elegans Behavior , 2005, Current Biology.

[15]  M. Wilson,et al.  Analyzing Functional Connectivity Using a Network Likelihood Model of Ensemble Neural Spiking Activity , 2005, Neural Computation.

[16]  Yuji Ikegaya,et al.  Large-scale imaging of cortical network activity with calcium indicators , 2005, Neuroscience Research.

[17]  J C Fiala,et al.  Reconstruct: a free editor for serial section microscopy , 2005, Journal of microscopy.

[18]  Bert Sakmann,et al.  Monosynaptic Connections between Pairs of Spiny Stellate Cells in Layer 4 and Pyramidal Cells in Layer 5A Indicate That Lemniscal and Paralemniscal Afferent Pathways Converge in the Infragranular Somatosensory Cortex , 2005, The Journal of Neuroscience.

[19]  Cori Bargmann,et al.  A circuit for navigation in Caenorhabditis elegans , 2005 .

[20]  Sen Song,et al.  Highly Nonrandom Features of Synaptic Connectivity in Local Cortical Circuits , 2005, PLoS biology.

[21]  Sooyoung Chung,et al.  Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex , 2005, Nature.

[22]  M. London,et al.  Dendritic computation. , 2005, Annual review of neuroscience.

[23]  Mark H. Ellisman,et al.  Statistical Criteria in fMRI Studies of Multisensory Integration Comparison of Vector Space Model Methodologies to Reconcile Cross-Species Neuroanatomical Concepts Development of a Model for Microphysiological Simulations , 2005 .

[24]  D. Mastronarde,et al.  New views of cells in 3D: an introduction to electron tomography. , 2005, Trends in cell biology.

[25]  Maryann E Martone,et al.  Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement. , 2004, Journal of structural biology.

[26]  E. White,et al.  Quantitative analysis of synaptic distribution along thalamocortical axons in adult mouse barrels , 2004, The Journal of comparative neurology.

[27]  W. Denk,et al.  Serial Block-Face Scanning Electron Microscopy to Reconstruct Three-Dimensional Tissue Nanostructure , 2004, PLoS biology.

[28]  R. Leapman,et al.  Novel techniques in electron microscopy , 2004, Current Opinion in Neurobiology.

[29]  Marcus Dyba,et al.  Concepts for nanoscale resolution in fluorescence microscopy , 2004, Current Opinion in Neurobiology.

[30]  G. Laurent,et al.  Multiplexing using synchrony in the zebrafish olfactory bulb , 2004, Nature Neuroscience.

[31]  Hironobu Ito,et al.  The anterograde and retrograde axonal transport of biotinylated dextran amine and biocytin in the nervous system of teleosts. , 2004, Brain research. Brain research protocols.

[32]  G. Buzsáki.  Large-scale recording of neuronal ensembles , 2004, Nature Neuroscience.

[33]  Noël Bonnet,et al.  Some trends in microscope image processing. , 2004, Micron.

[34]  Philippe Rostaing,et al.  Preservation of Immunoreactivity and Fine Structure of Adult C. elegans Tissues Using High-pressure Freezing , 2004, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[35]  C. Alexandre,et al.  Segment boundary formation in Drosophila embryos , 2003, Development.

[36]  W B Amos,et al.  How the Confocal Laser Scanning Microscope entered Biological Research , 2003, Biology of the cell.

[37]  J. C. Fiala,et al.  Three-dimensional structure of synapses in the brain and on the Web , 2002, Proceedings of the 2002 International Joint Conference on Neural Networks. IJCNN'02 (Cat. No.02CH37290).

[38]  K. Martin.  Microcircuits in visual cortex , 2002, Current Opinion in Neurobiology.

[39]  Thomas J Deerinck,et al.  Multicolor and Electron Microscopic Imaging of Connexin Trafficking , 2002, Science.

[40]  Edward L White,et al.  Specificity of cortical synaptic connectivity: Emphasis on perspectives gained from quantitative electron microscopy , 2002, Journal of neurocytology.

[41]  Mark H Ellisman,et al.  Ultrastructure of a Somatic Spine Mat for Nicotinic Signaling in Neurons , 2002, The Journal of Neuroscience.

[42]  M Marko,et al.  The Emergence of Electron Tomography as an Important Tool for Investigating Cellular Ultrastructure , 2001, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[43]  Arne Stoschek,et al.  The architecture of active zone material at the frog's neuromuscular junction , 2001, Nature.

[44]  J. Fiala,et al.  Dendrite Structure , 2001 .

[45]  A. Reiner,et al.  Pathway tracing using biotinylated dextran amines , 2000, Journal of Neuroscience Methods.

[46]  Mark H. Ellisman,et al.  Correlated 3D Light and Electron Microscopy: Use of High Voltage Electron Microscopy and Electron Tomography for Imaging Large Biological Structures , 2000 .

[47]  David N. Mastronarde,et al.  Golgi Structure in Three Dimensions: Functional Insights from the Normal Rat Kidney Cell , 1999, The Journal of cell biology.

[48]  G. Shepherd,et al.  Three-Dimensional Structure and Composition of CA3→CA1 Axons in Rat Hippocampal Slices: Implications for Presynaptic Connectivity and Compartmentalization , 1998, The Journal of Neuroscience.

[49]  Prof. Dr. Dr. Valentino Braitenberg,et al.  Cortex: Statistics and Geometry of Neuronal Connectivity , 1998, Springer Berlin Heidelberg.

[50]  G A Perkins,et al.  Electron tomography of large, multicomponent biological structures. , 1997, Journal of structural biology.

[51]  J R Kremer,et al.  Computer visualization of three-dimensional image data using IMOD. , 1996, Journal of structural biology.

[52]  Nirav C. Merchant,et al.  Flybrain, an on-line atlas and database of the Drosophila nervous system , 1995, Neuron.

[53]  Mark H. Ellisman,et al.  Serial Section Electron Tomography: A Method for Three-Dimensional Reconstruction of Large Structures , 1994, NeuroImage.

[54]  Martin Chalfie,et al.  Green fluorescent protein as a marker for gene expression , 1994 .

[55]  M. Chalfie,et al.  Green fluorescent protein as a marker for gene expression. , 1994, Science.

[56]  K M Harris,et al.  Occurrence and three-dimensional structure of multiple synapses between individual radiatum axons and their target pyramidal cells in hippocampal area CA1 , 1993, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[57]  Heekuck Oh,et al.  Neural Networks for Pattern Recognition , 1993, Adv. Comput..

[58]  E. V. Famiglietti,et al.  Synaptic organization of starburst amacrine cells in rabbit retina: Analysis of serial thin sections by electron microscopy and graphic reconstruction , 1991, The Journal of comparative neurology.

[59]  I. Divac.  Cortical circuits: Synaptic organization of the cerebral cortex. Structure, function and theory by Edward L. White, Birkäuser, 1989. Sw. fr. 88.00 (xvi + 223 pages) ISBN 3 7643 3402 9 , 1990, Trends in Neurosciences.

[60]  W. Denk,et al.  Two-photon laser scanning fluorescence microscopy. , 1990, Science.

[61]  L. Reimer.  Transmission Electron Microscopy: Physics of Image Formation and Microanalysis , 1989 .

[62]  J. S. McCasland,et al.  High‐resolution 2‐deoxyglucose mapping of functional cortical columns in mouse barrel cortex , 1988, The Journal of comparative neurology.

[63]  P Sterling,et al.  The ON-alpha ganglion cell of the cat retina and its presynaptic cell types , 1988, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[64]  S. Brenner,et al.  The structure of the nervous system of the nematode Caenorhabditis elegans. , 1986, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[65]  E. White,et al.  Synaptic connections of callosal projection neurons in the vibrissal region of mouse primary motor cortex: An electron microscopic/horseradish peroxidase study , 1986, The Journal of comparative neurology.

[66]  S. Brenner,et al.  The neural circuit for touch sensitivity in Caenorhabditis elegans , 1985, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[67]  T. Wiesel,et al.  Patterns of synaptic input to layer 4 of cat striate cortex , 1984, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[68]  P Sterling,et al.  Microcircuitry of bipolar cells in cat retina , 1984, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[69]  H. Kolb,et al.  Synaptic organization of the outer plexiform layer of the turtle retina: an electron microscope study of serial sections , 1984, Journal of neurocytology.

[70]  Leighton Sb,et al.  Oxygen plasma etching of entire block faces improves the resolution and usefulness of serial scanning electron microscopic images. , 1983 .

[71]  P. Sterling.  Microcircuitry of the cat retina. , 1983, Annual review of neuroscience.

[72]  S B Leighton,et al.  Oxygen plasma etching of entire block faces improves the resolution and usefulness of serial scanning electron microscopic images. , 1983, Scanning electron microscopy.

[73]  J. Adams.  Heavy metal intensification of DAB-based HRP reaction product. , 1981, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[74]  Leighton Sb.  SEM images of block faces, cut by a miniature microtome within the SEM - a technical note. , 1981 .

[75]  S. B. Leighton.  SEM images of block faces, cut by a miniature microtome within the SEM - a technical note. , 1981, Scanning electron microscopy.

[76]  Peter Sterling,et al.  A systematic approach to reconstructing microcircuitry by electron microscopy of serial sections , 1980, Brain Research Reviews.

[77]  A. Peters.  Thalamic input to the cerebral cortex , 1979, Trends in Neurosciences.

[78]  T. L. Davis,et al.  Microcircuitry of cat visual cortex: Classification of neurons in layer IV of area 17, and identification of the patterns of lateral geniculate input , 1979, The Journal of comparative neurology.

[79]  C. Levinthal,et al.  Three-dimensional computer reconstruction of neurons and neuronal assemblies. , 1979, Annual review of biophysics and bioengineering.

[80]  P. Somogyi,et al.  The study of golgi stained cells and of experimental degeneration under the electron microscope: A direct method for the identification in the visual cortex of three successive links in a neuron chain , 1978, Neuroscience.

[81]  M. Tavassoli,et al.  A modified technique to obtain uniform precipitation of lanthanum tracer in the extracellular space. , 1977, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[82]  Randle W. Ware.  Three-dimensional reconstruction from serial sections. , 1975, International review of cytology.

[83]  A. Glauert.  THE HIGH VOLTAGE ELECTRON MICROSCOPE IN BIOLOGY , 1974, The Journal of cell biology.

[84]  M. Hayat,et al.  Principles and Techniques of Electron Microscopy: Biological Applications , 1973 .

[85]  C. Levinthal,et al.  Structure and development of neuronal connections in isogenic organisms: variations and similarities in the optic system of Daphnia magna. , 1973, Proceedings of the National Academy of Sciences of the United States of America.

[86]  David G. Stork,et al.  Pattern Classification , 1973 .

[87]  J. Lavail,et al.  Retrograde Axonal Transport in the Central Nervous System , 1972, Science.

[88]  CYRUS LEVINTHAL,et al.  Three Dimensional Reconstruction from Serial Sections , 1972, Nature.

[89]  M. Karnovsky,et al.  THF EARLY STAGES OF ABSORPTION OF INJECTED HORSERADISH PEROXIDASE IN THE PROXIMAL TUBULES OF MOUSE KIDNEY: ULTRASTRUCTURAL CYTOCHEMISTRY BY A NEW TECHNIQUE , 1966, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[90]  F. Sjöstrand.  Ultrastructure of retinal rod synapses of the guinea pig eye as revealed by three-dimensional reconstructions from serial sections. , 1958, Journal of ultrastructure research.

[91]  F. S. Sjostrand.  Ultrastructure of retinal rod synapses of the guinea pig eye as revealed by three-dimensional reconstructions from serial sections. , 1958, Journal of ultrastructure research.