Molecular‐dynamics simulator for optimal control of molecular motion

In recognition of recent interest in developing optimal control techniques for manipulating molecular motion, this paper introduces a computer‐driven electromechanical analog of this process. The resultant molecular‐dynamics simulator (MDS) is centered around a linear air track for which the atoms of the controlled molecule are simulated as nearly frictionless carts on the track. Bonds in the simulated molecule are described by precision springs, and the interaction with an external optical field is simulated through a computer‐based linear driver. When the MDS is operated in the harmonic regime, it can be used as an exact analog of molecular‐scale quantum systems through Ehrenfest’s theorem or, equivalently, as a classical set of coupled oscillators. The tools of optimal control theory currently being applied at the molecular scale are used to design the forcing function for the MDS. Optical encoders are used to measure bond distances for graphic representation of the MDS behavior. Bond breaking can also...