Detection of microRNA by Electrocatalytic Amplification: A General Approach for Single-Particle Biosensing.

Here we report a sensing scheme for detection of microRNA (miRNA) using electrocatalytic amplification (ECA). ECA is a method in which nanoparticles (NPs) that are catalytic for a specific electrochemical reaction collide with an inert electrode surface. Each collision results in a detectable current transient. In the present article, we show that this general approach can be extended to detection of miRNA. Specifically, PtNPs are modified with a single-strand DNA (ssDNA) shell that is complementary to the miRNA target. Next, the ssDNA:miRNA conjugate is formed, which passivates the PtNP surface. In the presence of an enzyme called duplex specific nuclease (DSN), however, a fraction of the surface-bound DNA is removed thereby exposing some of the PtNP surface. In other words, the electrocatalytic properties of the PtNPs are reactivated only if miRNA complementary to ssDNA is present. This methodology resolves a number of problems that have rendered ECA ineffective for biosensing applications. Moreover, the results suggest that the underlying chemistry is broadly applicable to nucleic acid sensing.

[1]  G. Luther,et al.  Development of a Gold Amalgam Voltammetric Microelectrode for the Determination of Dissolved Fe, Mn, O2, and S(-II) in Porewaters of Marine and Freshwater Sediments. , 1995, Environmental science & technology.

[2]  S. Lukyanov,et al.  A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas. , 2002, Genome research.

[3]  Huixiang Li,et al.  DNA sequence detection using selective fluorescence quenching of tagged oligonucleotide probes by gold nanoparticles. , 2004, Analytical chemistry.

[4]  Shiping Fang,et al.  Surface enzyme kinetics for biopolymer microarrays: a combination of Langmuir and Michaelis-Menten concepts. , 2005, Langmuir : the ACS journal of surfaces and colloids.

[5]  R. Corn,et al.  Creating advanced multifunctional biosensors with surface enzymatic transformations. , 2006, Langmuir : the ACS journal of surfaces and colloids.

[6]  Shiping Fang,et al.  Attomole microarray detection of microRNAs by nanoparticle-amplified SPR imaging measurements of surface polyadenylation reactions. , 2006, Journal of the American Chemical Society.

[7]  Chad A Mirkin,et al.  Maximizing DNA loading on a range of gold nanoparticle sizes. , 2006, Analytical chemistry.

[8]  Xiaoyin Xiao,et al.  Current transients in single nanoparticle collision events. , 2008, Journal of the American Chemical Society.

[9]  Thomas Härtling,et al.  Monodisperse platinum nanospheres with adjustable diameters from 10 to 100 nm: synthesis and distinct optical properties. , 2008, Nano letters.

[10]  M. Mascini,et al.  Electrochemical nucleic acid-based biosensors: Concepts, terms, and methodology (IUPAC Technical Report) , 2010 .

[11]  L. Laimins,et al.  Human Papillomaviruses Modulate Expression of MicroRNA 203 upon Epithelial Differentiation to Control Levels of p63 Proteins , 2010, Journal of Virology.

[12]  Vasco Filipe,et al.  Critical Evaluation of Nanoparticle Tracking Analysis (NTA) by NanoSight for the Measurement of Nanoparticles and Protein Aggregates , 2010, Pharmaceutical Research.

[13]  A. Bard,et al.  Electrochemistry of Single Nanoparticles via Electrocatalytic Amplification , 2010 .

[14]  K. Ohuchida,et al.  MicroRNA-203 Expression as a New Prognostic Marker of Pancreatic Adenocarcinoma , 2010, Annals of Surgical Oncology.

[15]  R. Corn,et al.  Rapid microarray detection of DNA and proteins in microliter volumes with surface plasmon resonance imaging measurements. , 2011, Langmuir : the ACS journal of surfaces and colloids.

[16]  W. De,et al.  Prognostic significance of serum miRNA‐21 expression in human non‐small cell lung cancer , 2011, Journal of surgical oncology.

[17]  G. Calin,et al.  MicroRNA history: discovery, recent applications, and next frontiers. , 2011, Mutation research.

[18]  Thomas Tuschl,et al.  miRNAs in human cancer , 2011, The Journal of pathology.

[19]  B. Zhang,et al.  Stochastic electrochemistry with electrocatalytic nanoparticles at inert ultramicroelectrodes--theory and experiments. , 2011, Physical chemistry chemical physics : PCCP.

[20]  Chad A Mirkin,et al.  Scanometric microRNA array profiling of prostate cancer markers using spherical nucleic acid-gold nanoparticle conjugates. , 2012, Analytical chemistry.

[21]  Stanley C. S. Lai,et al.  Landing and catalytic characterization of individual nanoparticles on electrode surfaces. , 2012, Journal of the American Chemical Society.

[22]  Aaron R. Halpern,et al.  On-chip synthesis of protein microarrays from DNA microarrays via coupled in vitro transcription and translation for surface plasmon resonance imaging biosensor applications. , 2012, Journal of the American Chemical Society.

[23]  Mark R Servos,et al.  Fast pH-assisted functionalization of silver nanoparticles with monothiolated DNA. , 2012, Chemical communications.

[24]  Mark R. Servos,et al.  Instantaneous and quantitative functionalization of gold nanoparticles with thiolated DNA using a pH-assisted and surfactant-free route. , 2012, Journal of the American Chemical Society.

[25]  Scott N. Thorgaard,et al.  Single particle detection by area amplification: single wall carbon nanotube attachment to a nanoelectrode. , 2013, Journal of the American Chemical Society.

[26]  D. A. Robinson,et al.  Influence of the redox indicator reaction on single-nanoparticle collisions at mercury- and bismuth-modified Pt ultramicroelectrodes. , 2013, Langmuir : the ACS journal of surfaces and colloids.

[27]  A. Bard,et al.  Boron doped diamond ultramicroelectrodes: a generic platform for sensing single nanoparticle electrocatalytic collisions. , 2013, Chemical communications.

[28]  Silvana Andreescu,et al.  Electroanalytical evaluation of antioxidant activity of cerium oxide nanoparticles by nanoparticle collisions at microelectrodes. , 2013, Journal of the American Chemical Society.

[29]  Keith J Stevenson,et al.  Ultrasensitive electroanalytical tool for detecting, sizing, and evaluating the catalytic activity of platinum nanoparticles. , 2013, Journal of the American Chemical Society.

[30]  M. Koper,et al.  Influence of hydrazine-induced aggregation on the electrochemical detection of platinum nanoparticles. , 2013, Langmuir : the ACS journal of surfaces and colloids.

[31]  M. Alpuche‐Aviles,et al.  Observation of individual semiconducting nanoparticle collisions by stochastic photoelectrochemical currents. , 2013, Journal of the American Chemical Society.

[32]  Sanghamitra Chatterjee,et al.  Nanomaterials based electrochemical sensors for biomedical applications. , 2013, Chemical Society reviews.

[33]  R. Crooks,et al.  Electrochemical detection of individual DNA hybridization events. , 2013, Lab on a chip.

[34]  R. Corn,et al.  DNAzyme footprinting: detecting protein-aptamer complexation on surfaces by blocking DNAzyme cleavage activity. , 2013, Journal of the American Chemical Society.

[35]  B. Zhang,et al.  Chemically resolved transient collision events of single electrocatalytic nanoparticles. , 2014, Journal of the American Chemical Society.

[36]  Morgan J. Anderson,et al.  Single nanoparticle collisions at microfluidic microband electrodes: the effect of electrode material and mass transfer. , 2014, Langmuir : the ACS journal of surfaces and colloids.

[37]  Pier Paolo Pompa,et al.  Absolute and direct microRNA quantification using DNA-gold nanoparticle probes. , 2014, Journal of the American Chemical Society.

[38]  Xuesi Chen,et al.  miRNA oligonucleotide and sponge for miRNA-21 inhibition mediated by PEI-PLL in breast cancer therapy. , 2015, Acta biomaterialia.

[39]  Stanley C. S. Lai,et al.  Impact of Surface Chemistry on Nanoparticle-Electrode Interactions in the Electrochemical Detection of Nanoparticle Collisions. , 2015, Langmuir : the ACS journal of surfaces and colloids.

[40]  R. Crooks,et al.  Electrocatalytic Amplification of Single Nanoparticle Collisions Using DNA-Modified Surfaces. , 2015, Langmuir : the ACS journal of surfaces and colloids.

[41]  R. Corn,et al.  Surface Enzyme Chemistries for Ultrasensitive Microarray Biosensing with SPR Imaging , 2015, Langmuir : the ACS journal of surfaces and colloids.

[42]  D. A. Robinson,et al.  Increasing the Collision Rate of Particle Impact Electroanalysis with Magnetically Guided Pt-Decorated Iron Oxide Nanoparticles. , 2015, ACS nano.

[43]  G. Shen,et al.  DNAzyme-based biosensors and nanodevices. , 2015, Chemical communications.

[44]  D. A. Robinson,et al.  Mechanistic aspects of hydrazine-induced Pt colloid instability and monitoring aggregation kinetics with nanoparticle impact electroanalysis. , 2016, Faraday discussions.

[45]  Stephen J. Percival,et al.  Fast-Scan Cyclic Voltammetry Allows Determination of Electron-Transfer Kinetic Constants in Single Nanoparticle Collision , 2016 .

[46]  D. A. Robinson,et al.  Addressing Colloidal Stability for Unambiguous Electroanalysis of Single Nanoparticle Impacts. , 2016, The journal of physical chemistry letters.

[47]  B. Zhang,et al.  Nanopipette-Based Electroplated Nanoelectrodes. , 2016, Analytical chemistry.

[48]  R. Crooks Concluding remarks: single entity electrochemistry one step at a time. , 2016, Faraday discussions.

[49]  P. Unwin,et al.  Time-Resolved Detection of Surface Oxide Formation at Individual Gold Nanoparticles: Role in Electrocatalysis and New Approach for Sizing by Electrochemical Impacts. , 2016, Journal of the American Chemical Society.

[50]  B. Zhang,et al.  Nanoscale Electrochemistry Revisited. , 2016, Analytical chemistry.

[51]  Shaltiel Eloul,et al.  Electrode-particle impacts: a users guide. , 2016, Physical chemistry chemical physics : PCCP.

[52]  Rui Hao,et al.  Observing Electrochemical Dealloying by Single-Nanoparticle Collision. , 2016, Analytical chemistry.

[53]  Todd J. Anderson,et al.  Single-Nanoparticle Electrochemistry through Immobilization and Collision. , 2016, Accounts of chemical research.

[54]  P. Unwin,et al.  Frontiers in Nanoscale Electrochemical Imaging: Faster, Multifunctional, and Ultrasensitive. , 2016, Langmuir : the ACS journal of surfaces and colloids.

[55]  P. Ashton-Prolla,et al.  miRNA-21 and miRNA-34a Are Potential Minimally Invasive Biomarkers for the Diagnosis of Pancreatic Ductal Adenocarcinoma , 2016, Pancreas.