Tropical agricultural land management in fl uences on soil microbial communities through its effect on soil organic carbon Soil Biology & Biochemistry

We analyzed the microbial community that developed after 4 years of testing different soil-crop man- agement systems in the savannah e forest transition zone of Eastern Ghana where management systems can rapidly alter stored soil carbon as well as soil fertility. The agricultural managements were: (i) the local practice of fallow regrowth of native elephant grass ( Pennisetum purpureum ) followed by biomass burning before planting maize in the spring, (ii) the same practice but without burning and the maize receiving mineral nitrogen fertilizer, (iii) a winter crop of a legume, pigeon pea ( Cajanus cajan ), followed by maize, (iv) vegetation free winter period (bare fallow) followed by maize, and (v) unmanaged elephant grass-shrub vegetation. The mean soil organic carbon (SOC) contents of the soils after 4 years were: 1.29, 1.67, 1.54, 0.80 and 1.34%, respectively, differences that should affect resources for the mi- crobial community. From about 290,000 sequences obtained by pyrosequencing the SSU rRNA gene, canonical corre- spondence analysis showed that SOC was the most important factor that explained differences in microbial community structure among treatments. This analysis as well as phylogenetic ecological network construction indicated that members of the Acidobacteria GP4 and GP6 were more abundant in soils with relatively high SOC whereas Acidobacteria GP1, GP7, and Actinobacteria were more prevalent in soil with lower SOC. Burning of winter fallow vegetation led to an increase in Bacillales, especially those belonging to spore-forming genera. Of the managements, pigeon-pea cultivation during the winter period pro- moted a higher microbial diversity and also sequestered more SOC, presumably improving soil structure, fertility, and resiliency.

[1]  Woo Jun Sul,et al.  Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering , 2011, Proceedings of the National Academy of Sciences.

[2]  Kenneth L. Jones,et al.  Members of soil bacterial communities sensitive to tillage and crop rotation , 2010 .

[3]  Ye Deng,et al.  Functional Molecular Ecological Networks , 2010, mBio.

[4]  P. Kämpfer,et al.  Sporosarcina contaminans sp. nov. and Sporosarcina thermotolerans sp. nov., two endospore-forming species. , 2010, International journal of systematic and evolutionary microbiology.

[5]  R. Knight,et al.  Soil bacterial and fungal communities across a pH gradient in an arable soil , 2010, The ISME Journal.

[6]  James W. Jones,et al.  Effects of crop rotation and fallow residue management on maize growth, yield and soil carbon in a savannah-forest transition zone of Ghana , 2009, The Journal of Agricultural Science.

[7]  R. Knight,et al.  A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses , 2009, The ISME Journal.

[8]  James R. Cole,et al.  The Ribosomal Database Project: improved alignments and new tools for rRNA analysis , 2008, Nucleic Acids Res..

[9]  S. Adiku,et al.  Changes in the biodiversity of microbial populations in tropical soils under different fallow treatments , 2008 .

[10]  Andreas Wilke,et al.  phylogenetic and functional analysis of metagenomes , 2022 .

[11]  S. Trumbore,et al.  An Uncertain Future for Soil Carbon , 2008, Science.

[12]  S. Adiku,et al.  Short-term effects of crop rotation, residue management, and soil water on carbon mineralization in a tropical cropping system , 2008, Plant and Soil.

[13]  Michael L. Creech,et al.  Integration of biological networks and gene expression data using Cytoscape , 2007, Nature Protocols.

[14]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[15]  J. Six,et al.  Long-term impact of reduced tillage and residue management on soil carbon stabilization: Implications for conservation agriculture on contrasting soils , 2007 .

[16]  R. B. Jackson,et al.  Toward an ecological classification of soil bacteria. , 2007, Ecology.

[17]  R. Lal,et al.  Carbon Sequestration , 2010 .

[18]  Feng Luo,et al.  Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory , 2007, BMC Bioinformatics.

[19]  G. Robertson,et al.  Land-Use Intensity Effects on Soil Organic Carbon Accumulation Rates and Mechanisms , 2007, Ecosystems.

[20]  Susan M. Huse,et al.  Microbial diversity in the deep sea and the underexplored “rare biosphere” , 2006, Proceedings of the National Academy of Sciences.

[21]  P. Janssen Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes , 2006, Applied and Environmental Microbiology.

[22]  Richard H. Scheuermann,et al.  Application of random matrix theory to biological networks , 2005, q-bio/0503035.

[23]  Wen-Chang Chang,et al.  Rubrobacter taiwanensis sp. nov., a novel thermophilic, radiation-resistant species isolated from hot springs. , 2004, International journal of systematic and evolutionary microbiology.

[24]  Christian P. Giardina,et al.  The effects of slash burning on ecosystem nutrients during the land preparation phase of shifting cultivation , 2000, Plant and Soil.

[25]  P. Golyshin,et al.  Thermoleophilum album and Thermoleophilum minutum are culturable representatives of group 2 of the Rubrobacteridae (Actinobacteria). , 2003, International journal of systematic and evolutionary microbiology.

[26]  Richard L. Sandor,et al.  Greenhouse–gas–trading markets , 2002, Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences.

[27]  V. R. Tolbert,et al.  Potential environmental effects of corn (Zea mays L.) stover removal with emphasis on soil organic matter and erosion , 2002 .

[28]  M. Scholes,et al.  Input control of organic matter dynamics , 1997 .

[29]  R. Houghton The worldwide extent of land-use change , 1994 .

[30]  L. Mann,et al.  CHANGES IN SOIL CARBON STORAGE AFTER CULTIVATION , 1986 .