A multiplex culture system for the long‐term growth of fission yeast cells

Maintenance of long‐term cultures of yeast cells is central to a broad range of investigations, from metabolic studies to laboratory evolution assays. However, repeated dilutions of batch cultures lead to variations in medium composition, with implications for cell physiology. In Saccharomyces cerevisiae, powerful miniaturized chemostat setups, or ministat arrays, have been shown to allow for constant dilution of multiple independent cultures. Here we set out to adapt these arrays for continuous culture of a morphologically and physiologically distinct yeast, the fission yeast Schizosaccharomyces pombe, with the goal of maintaining constant population density over time. First, we demonstrated that the original ministats are incompatible with growing fission yeast for more than a few generations, prompting us to modify different aspects of the system design. Next, we identified critical parameters for sustaining unbiased vegetative growth in these conditions. This requires deletion of the gsf2 flocculin‐encoding gene, along with addition of galactose to the medium and lowering of the culture temperature. Importantly, we improved the flexibility of the ministats by developing a piezo‐pump module for the independent regulation of the dilution rate of each culture. This made it possible to easily grow strains that have different generation times in the same assay. Our system therefore allows for maintaining multiple fission yeast cultures in exponential growth, adapting the dilution of each culture over time to keep constant population density for hundreds of generations. These multiplex culture systems open the door to a new range of long‐term experiments using this model organism. © 2017 The Authors. Yeast published by John Wiley & Sons, Ltd.

[1]  K. Nasmyth A control acting over the initiation of DNA replication in the yeast Schizosaccharomyces pombe. , 1979, Journal of cell science.

[2]  Maitreya J. Dunham,et al.  The Fitness Consequences of Aneuploidy Are Driven by Condition-Dependent Gene Effects , 2015, PLoS biology.

[3]  K. Takegawa,et al.  Identification of a galactose‐specific flocculin essential for non‐sexual flocculation and filamentous growth in Schizosaccharomyces pombe , 2011, Molecular microbiology.

[4]  J. Friend,et al.  Fabrication of microfluidic devices using polydimethylsiloxane. , 2010, Biomicrofluidics.

[5]  J. Broach Nutritional Control of Growth and Development in Yeast , 2012, Genetics.

[6]  G. Ammerer,et al.  Controlling gene expression in response to stress , 2011, Nature Reviews Genetics.

[7]  R. Milo,et al.  Noise in gene expression is coupled to growth rate , 2015, Genome research.

[8]  K. Takegawa,et al.  The zinc finger protein Gsf1 regulates Gsf2-dependent flocculation in fission yeast. , 2013, FEMS yeast research.

[9]  Jonathan D Posner,et al.  Simple replica micromolding of biocompatible styrenic elastomers. , 2013, Lab on a chip.

[10]  S. Moreno,et al.  Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. , 1991, Methods in enzymology.

[11]  Eric Klavins,et al.  A Low Cost, Customizable Turbidostat for Use in Synthetic Circuit Characterization , 2014, ACS synthetic biology.

[12]  J. P. van Dijken,et al.  Metabolic fluxes in chemostat cultures of Schizosaccharomyces pombe grown on mixtures of glucose and ethanol. , 1996, Microbiology.

[13]  Maitreya J. Dunham,et al.  The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection , 2013, G3: Genes, Genomes, Genetics.

[14]  J. Hayles,et al.  Genetics of the fission yeast Schizosaccharomyces pombe. , 1992, Annual review of genetics.

[15]  K. Takegawa,et al.  Cell Surface Galactosylation Is Essential for Nonsexual Flocculation in Schizosaccharomyces pombe , 1999, Journal of bacteriology.

[16]  Elmar Heinzle,et al.  A system of miniaturized stirred bioreactors for parallel continuous cultivation of yeast with online measurement of dissolved oxygen and off‐gas , 2013, Biotechnology and bioengineering.

[17]  Maitreya J. Dunham,et al.  Design and Use of Multiplexed Chemostat Arrays , 2013, Journal of visualized experiments : JoVE.

[18]  Damien Coudreuse,et al.  Driving the cell cycle with a minimal CDK control network , 2010, Nature.

[19]  Paul A Hoskisson,et al.  Continuous culture--making a comeback? , 2005, Microbiology.