The genomic landscape of human cellular circadian variation points to a novel role for the signalosome
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Steven A. Brown | C. Howald | E. Dermitzakis | S. Antonarakis | E. Falconnet | A. Kramer | D. Kunz | C. Borel | M. Gutierrez-Arcelus | K. Popadin | F. Gachon | B. Maier | Ludmila Gaspar | D. Mauvoisin | E. Moriggi | Daniel Mauvoisin
[1] Andrew E. Rosselot,et al. Intercellular Coupling of the Cell Cycle and Circadian Clock in Adult Stem Cell Culture. , 2016, Molecular cell.
[2] Andres Metspalu,et al. Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci , 2016, PLoS genetics.
[3] Y. Kochi. Genetics of autoimmune diseases: perspectives from genome-wide association studies. , 2016, International immunology.
[4] Baqun Zhang,et al. HiView: an integrative genome browser to leverage Hi-C results for the interpretation of GWAS variants , 2016, BMC Research Notes.
[5] Max A. Little,et al. Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank , 2016, Nature Communications.
[6] N. Eriksson,et al. GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person , 2016, Nature Communications.
[7] Samuel E. Jones,et al. Genome-wide association analyses in > 119,000 individuals identifies thirteen morningness and two sleep duration loci , 2016, bioRxiv.
[8] M. Putker,et al. Reciprocal Control of the Circadian Clock and Cellular Redox State - a Critical Appraisal , 2016, Molecules and cells.
[9] Gregory Lefebvre,et al. Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver , 2015, Proceedings of the National Academy of Sciences.
[10] José A. Dianes,et al. 2016 update of the PRIDE database and its related tools , 2015, Nucleic Acids Res..
[11] M. Naumann,et al. Diversity of COP9 signalosome structures and functional consequences , 2015, FEBS letters.
[12] E. Dermitzakis,et al. Tissue-Specific Effects of Genetic and Epigenetic Variation on Gene Regulation and Splicing , 2015, PLoS genetics.
[13] E. Pick,et al. Moonlighting and pleiotropy within two regulators of the degradation machinery: the proteasome lid and the CSN. , 2014, Biochemical Society transactions.
[14] F. Naef,et al. Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver , 2013, Proceedings of the National Academy of Sciences.
[15] Hongyu Zhao,et al. A review of post-GWAS prioritization approaches , 2013, Front. Genet..
[16] D. A. Coult,et al. Molecules and Cells , 2013 .
[17] E. Dermitzakis,et al. Expression quantitative trait loci: present and future , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[18] Jing Wang,et al. WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013 , 2013, Nucleic Acids Res..
[19] Xinran Liu,et al. Competing E3 Ubiquitin Ligases Govern Circadian Periodicity by Degradation of CRY in Nucleus and Cytoplasm , 2013, Cell.
[20] Y. Fukada,et al. FBXL21 Regulates Oscillation of the Circadian Clock through Ubiquitination and Stabilization of Cryptochromes , 2013, Cell.
[21] B. Barnes,et al. The COP9 Signalosome Interacts with and Regulates Interferon Regulatory Factor 5 Protein Stability , 2012, Molecular and Cellular Biology.
[22] O. Delaneau,et al. A linear complexity phasing method for thousands of genomes , 2011, Nature Methods.
[23] I. Edery,et al. NEMO/NLK Phosphorylates PERIOD to Initiate a Time-Delay Phosphorylation Circuit that Sets Circadian Clock Speed , 2011, Cell.
[24] D. Virshup,et al. Casein kinase 1: Complexity in the family. , 2011, The international journal of biochemistry & cell biology.
[25] M. Mann,et al. Andromeda: a peptide search engine integrated into the MaxQuant environment. , 2011, Journal of proteome research.
[26] Suhua Chang,et al. i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide association study , 2010, Nucleic Acids Res..
[27] L. Rogge,et al. The Human COP9 Signalosome Protects Ubiquitin-conjugating Enzyme 3 (UBC3/Cdc34) from β-Transducin Repeat-containing Protein (βTrCP)-mediated Degradation* , 2010, The Journal of Biological Chemistry.
[28] E. Dermitzakis,et al. Candidate Causal Regulatory Effects by Integration of Expression QTLs with Complex Trait Genetic Associations , 2010, PLoS genetics.
[29] Andrew I. Su,et al. A Genome-wide RNAi Screen for Modifiers of the Circadian Clock in Human Cells , 2009, Cell.
[30] P. Deloukas,et al. Common Regulatory Variation Impacts Gene Expression in a Cell Type–Dependent Manner , 2009, Science.
[31] Thomas Wallach,et al. A large-scale functional RNAi screen reveals a role for CK2 in the mammalian circadian clock. , 2009, Genes & development.
[32] Satchidananda Panda,et al. Network Features of the Mammalian Circadian Clock , 2009, PLoS biology.
[33] C. Chien,et al. The COP9 Signalosome Is Required for Light-Dependent Timeless Degradation and Drosophila Clock Resetting , 2009, The Journal of Neuroscience.
[34] M. Schantz. Phenotypic effects of genetic variability in human clock genes on circadian and sleep parameters , 2008, Journal of Genetics.
[35] John B. Hogenesch,et al. WAVECLOCK: wavelet analysis of circadian oscillation , 2008, Bioinform..
[36] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[37] Lei Fang,et al. Characterization of the human COP9 signalosome complex using affinity purification and mass spectrometry. , 2008, Journal of proteome research.
[38] T. Roenneberg,et al. The search for circadian clock components in humans: new perspectives for association studies. , 2008, Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas.
[39] A. Kramer,et al. The phospho-occupancy of an atypical SLIMB-binding site on PERIOD that is phosphorylated by DOUBLETIME controls the pace of the clock. , 2008, Genes & development.
[40] A. Sehgal,et al. Identification of novel genes involved in light-dependent CRY degradation through a genome-wide RNAi screen. , 2008, Genes & development.
[41] Steven A. Brown,et al. Molecular insights into human daily behavior , 2008, Proceedings of the National Academy of Sciences.
[42] Patrick Taffé,et al. In Vitro Whole-Genome Analysis Identifies a Susceptibility Locus for HIV-1 , 2008, PLoS biology.
[43] R. König,et al. A probability-based approach for the analysis of large-scale RNAi screens , 2007, Nature Methods.
[44] Joseph S. Takahashi,et al. Circadian Mutant Overtime Reveals F-box Protein FBXL3 Regulation of Cryptochrome and Period Gene Expression , 2007, Cell.
[45] M. Pagano,et al. The After-Hours Mutant Reveals a Role for Fbxl3 in Determining Mammalian Circadian Period , 2007, Science.
[46] Christopher R. Jones,et al. Modeling of a Human Circadian Mutation Yields Insights into Clock Regulation by PER2 , 2007, Cell.
[47] Hanspeter Herzel,et al. Differential effects of PER2 phosphorylation: molecular basis for the human familial advanced sleep phase syndrome (FASPS). , 2006, Genes & development.
[48] Steven A. Brown,et al. Open access, freely available online PLoS BIOLOGY The Period Length of Fibroblast Circadian Gene Expression Varies Widely among Human Individuals , 2022 .
[49] Qun He,et al. The COP9 signalosome regulates the Neurospora circadian clock by controlling the stability of the SCFFWD-1 complex. , 2005, Genes & development.
[50] Ying Xu,et al. Functional consequences of a CKIδ mutation causing familial advanced sleep phase syndrome , 2005, Nature.
[51] Xing Wang Deng,et al. The COP9 signalosome. , 2003, Annual review of cell and developmental biology.
[52] M. Olivier. A haplotype map of the human genome. , 2003, Nature.
[53] M. Olivier. A haplotype map of the human genome , 2003, Nature.
[54] O. Medalia,et al. Protein kinase CK2 and protein kinase D are associated with the COP9 signalosome , 2003, The EMBO journal.
[55] L. Aravind,et al. Role of Predicted Metalloprotease Motif of Jab1/Csn5 in Cleavage of Nedd8 from Cul1 , 2002, Science.
[56] Gregor Eichele,et al. Nonredundant Roles of the mPer1 and mPer2 Genes in the Mammalian Circadian Clock , 2001, Cell.
[57] Christopher R. Jones,et al. An hPer2 Phosphorylation Site Mutation in Familial Advanced Sleep Phase Syndrome , 2001, Science.
[58] Steven A. Brown,et al. Resetting of circadian time in peripheral tissues by glucocorticoid signaling. , 2000, Science.
[59] D. P. King,et al. Role of the CLOCK protein in the mammalian circadian mechanism. , 1998, Science.
[60] W. Schaffner,et al. Rapid detection of octamer binding proteins with 'mini-extracts', prepared from a small number of cells. , 1989, Nucleic acids research.
[61] Steven A. Brown,et al. Measuring circadian clock function in human cells. , 2015, Methods in enzymology.
[62] M. Malcangio,et al. The role of glia in the spinal cord in neuropathic and inflammatory pain. , 2015, Handbook of experimental pharmacology.
[63] F. Naef,et al. Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells , 2014 .
[64] Steven A. Brown,et al. Peripheral circadian oscillators in mammals. , 2013, Handbook of experimental pharmacology.
[65] D. Hochstrasser,et al. Shotgun proteomics: a relative quantitative approach using Off-Gel electrophoresis and LC-MS/MS. , 2011 .
[66] Charles E. Vejnar,et al. Identification of cis- and trans-regulatory variation modulating microRNA expression levels in human fibroblasts. , 2011, Genome research.
[67] R. Lyngsoe G. Hellenthal,et al. Genome-wide association analysis , 2007 .
[68] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .