A Forward Model to Build Unbiased Atlases from Curves and Surfaces

Building an atlas from a set of anatomical data relies on (1) the construction of a mean anatomy (called template or prototype) and (2) the estimation of the variations of this template within the population. To avoid biases introduced by separate processing, we jointly estimate the template and its deformation, based on a consistent statistical model. We use here a forward model that considers data as noisy deformations of an unknown template. This di ers from backward schemes which estimate a template by pulling back data into a common reference frame. Once the atlas is built, the likelihood of a new observation depends on the Jacobian of the deformations in the backward setting, whereas it is directly taken into account while building the atlas in the forward scheme. As a result, a speci c numerical scheme is required to build atlases. The feasibility of the approach is shown by building atlases from 34 sets of 70 sulcal lines and 32 sets of 10 deep brain structures.

[1]  Alain Trouvé,et al.  Bayesian template estimation in computational anatomy , 2008, NeuroImage.

[2]  Anand Rangarajan,et al.  Unsupervised learning of an Atlas from unlabeled point-sets , 2004, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[3]  Stephen R. Marsland,et al.  Constructing diffeomorphic representations for the groupwise analysis of nonrigid registrations of medical images , 2004, IEEE Transactions on Medical Imaging.

[4]  N. Aronszajn Theory of Reproducing Kernels. , 1950 .

[5]  Alain Trouvé,et al.  Measuring Brain Variability Via Sulcal Lines Registration: A Diffeomorphic Approach , 2007, MICCAI.

[6]  Alain Trouvé,et al.  Sparse Approximation of Currents for Statistics on Curves and Surfaces , 2008, MICCAI.

[7]  J. Gee,et al.  Geodesic estimation for large deformation anatomical shape averaging and interpolation , 2004, NeuroImage.

[8]  S. Joshi,et al.  Template estimation form unlabeled point set data and surfaces for Computational Anatomy , 2006 .

[9]  Joan Alexis Glaunès Transport par difféomorphismes de points, de mesures et de courants pour la comparaison de formes et l'anatomie numérique , 2005 .

[10]  Y. Amit,et al.  Towards a coherent statistical framework for dense deformable template estimation , 2007 .

[11]  Alain Trouvé,et al.  Bayesian Deformable Models Building via Stochastic Approximation Algorithm: A Convergence Study , 2007 .

[12]  W. Eric L. Grimson,et al.  Efficient Population Registration of 3D Data , 2005, CVBIA.

[13]  Paul Dupuis,et al.  Variational problems on ows of di eomorphisms for image matching , 1998 .

[14]  Joan Alexis Glaunès,et al.  Surface Matching via Currents , 2005, IPMI.

[15]  Guido Gerig,et al.  Unbiased diffeomorphic atlas construction for computational anatomy , 2004, NeuroImage.

[16]  Nicholas Ayache,et al.  The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration , 1998, MICCAI.

[17]  Alain Trouvé,et al.  Diffeomorphisms Groups and Pattern Matching in Image Analysis , 1998, International Journal of Computer Vision.

[18]  Y. C. Pati,et al.  Orthogonal matching pursuit: recursive function approximation with applications to wavelet decomposition , 1993, Proceedings of 27th Asilomar Conference on Signals, Systems and Computers.

[19]  Paul M. Thompson,et al.  Measuring brain variability by extrapolating sparse tensor fields measured on sulcal lines , 2007, NeuroImage.