Modification Site Localization Scoring Integrated into a Search Engine*
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Peter R Baker | Jonathan C Trinidad | Robert J Chalkley | Peter R. Baker | P. Baker | J. Trinidad | R. Chalkley
[1] Peter R Baker,et al. Finding Chimeras: a Bioinformatics Strategy for Identification of Cross-linked Peptides* , 2009, Molecular & Cellular Proteomics.
[2] M. Piggott,et al. Focus on phosphoaspartate and phosphoglutamate , 2011, Amino Acids.
[3] M. Mann,et al. Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks , 2006, Cell.
[4] B. Kuster,et al. Confident Phosphorylation Site Localization Using the Mascot Delta Score , 2010, Molecular & Cellular Proteomics.
[5] Robert J Chalkley,et al. Protein PTMs: post-translational modifications or pesky trouble makers? , 2010, Journal of mass spectrometry : JMS.
[6] Yingming Zhao,et al. Modification‐specific proteomics: Strategies for characterization of post‐translational modifications using enrichment techniques , 2009, Proteomics.
[7] Steven P Gygi,et al. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry , 2007, Nature Methods.
[8] John R Yates,et al. Mass spectrometry in high-throughput proteomics: ready for the big time , 2010, Nature Methods.
[9] Peter R Baker,et al. In-depth Analysis of Tandem Mass Spectrometry Data from Disparate Instrument Types*S , 2008, Molecular & Cellular Proteomics.
[10] K. Resing,et al. Mapping protein post-translational modifications with mass spectrometry , 2007, Nature Methods.
[11] D. N. Perkins,et al. Probability‐based protein identification by searching sequence databases using mass spectrometry data , 1999, Electrophoresis.
[12] Alexey I Nesvizhskii,et al. Analysis and validation of proteomic data generated by tandem mass spectrometry , 2007, Nature Methods.
[13] S. Mathivanan,et al. A curated compendium of phosphorylation motifs , 2007, Nature Biotechnology.
[14] Robert J Chalkley,et al. Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides , 2009, Proceedings of the National Academy of Sciences.
[15] Peter R Baker,et al. Improving Software Performance for Peptide Electron Transfer Dissociation Data Analysis by Implementation of Charge State- and Sequence-Dependent Scoring* , 2010, Molecular & Cellular Proteomics.
[16] Dekel Tsur,et al. Identification of post-translational modifications by blind search of mass spectra , 2005, Nature Biotechnology.
[17] J. Yates,et al. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database , 1994, Journal of the American Society for Mass Spectrometry.
[18] Peter R. Baker,et al. Comprehensive Analysis of a Multidimensional Liquid Chromatography Mass Spectrometry Dataset Acquired on a Quadrupole Selecting, Quadrupole Collision Cell, Time-of-flight Mass Spectrometer , 2005, Molecular & Cellular Proteomics.
[19] Albert J R Heck,et al. Comparative Assessment of Site Assignments in CID and Electron Transfer Dissociation Spectra of Phosphopeptides Discloses Limited Relocation of Phosphate Groups* , 2010, Molecular & Cellular Proteomics.
[20] Brian E. Ruttenberg,et al. PhosphoScore: an open-source phosphorylation site assignment tool for MSn data. , 2008, Journal of proteome research.
[21] Martin Zeller,et al. SLoMo: automated site localization of modifications from ETD/ECD mass spectra. , 2009, Journal of proteome research.
[22] Steven P Gygi,et al. A probability-based approach for high-throughput protein phosphorylation analysis and site localization , 2006, Nature Biotechnology.
[23] A. L. Burlingame,et al. Statistical analysis of Peptide electron transfer dissociation fragmentation mass spectrometry. , 2010, Analytical chemistry.
[24] A. Nesvizhskii. A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics. , 2010, Journal of proteomics.