Identification of the transcription factor MAZ as a regulator of erythropoiesis.

Erythropoiesis requires a combination of ubiquitous and tissue-specific transcription factors (TFs). Here, through DNA affinity purification followed by mass spectrometry, we have identified the widely expressed protein MAZ (Myc-associated zinc finger) as a TF that binds to the promoter of the erythroid-specific human α-globin gene. Genome-wide mapping in primary human erythroid cells revealed that MAZ also occupies active promoters as well as GATA1-bound enhancer elements of key erythroid genes. Consistent with an important role during erythropoiesis, knockdown of MAZ reduces α-globin expression in K562 cells and impairs differentiation in primary human erythroid cells. Genetic variants in the MAZ locus are associated with changes in clinically important human erythroid traits. Taken together, these findings reveal the zinc-finger TF MAZ to be a previously unrecognized regulator of the erythroid differentiation program.

[1]  Arndt F. Siekmann,et al.  Transcriptional regulatory network controlling the ontogeny of hematopoietic stem cells , 2019, bioRxiv.

[2]  Phillip A. Richmond,et al.  JASPAR 2020: update of the open-access database of transcription factor binding profiles , 2019, Nucleic Acids Res..

[3]  William J. R. Longabaugh,et al.  Absolute quantification of transcription factors reveals principles of gene regulation in erythropoiesis , 2019, bioRxiv.

[4]  E. Fraenkel,et al.  Zfp281 (ZBP-99) plays a functionally redundant role with Zfp148 (ZBP-89) during erythroid development. , 2019, Blood advances.

[5]  S. Philipsen,et al.  Robust hematopoietic specification requires the ubiquitous Sp1 and Sp3 transcription factors , 2019, Epigenetics & Chromatin.

[6]  L. N. van de Lagemaat,et al.  CpG binding protein (CFP1) occupies open chromatin regions of active genes, including enhancers and non-CpG islands , 2018, Epigenetics & Chromatin.

[7]  D. Lamb,et al.  16p11.2 transcription factor MAZ is a dosage-sensitive regulator of genitourinary development , 2018, Proceedings of the National Academy of Sciences of the United States of America.

[8]  J. Michael Cherry,et al.  The Encyclopedia of DNA elements (ENCODE): data portal update , 2017, Nucleic Acids Res..

[9]  K. Rawlik,et al.  An atlas of genetic associations in UK Biobank , 2017, bioRxiv.

[10]  S. Thein,et al.  Genetic control of erythropoiesis , 2017, Current opinion in hematology.

[11]  D. Vernimmen Globins, from Genes to Physiology and Diseases. , 2017, Blood cells, molecules & diseases.

[12]  Howard Y. Chang,et al.  Lineage-specific and single cell chromatin accessibility charts human hematopoiesis and leukemia evolution , 2016, Nature Genetics.

[13]  Shou-Dong Lee,et al.  Akt phosphorylates myc-associated zinc finger protein (MAZ), releases P-MAZ from the p53 promoter, and activates p53 transcription. , 2016, Cancer letters.

[14]  A. Perkins,et al.  Krüppeling erythropoiesis: an unexpected broad spectrum of human red blood cell disorders due to KLF1 variants. , 2016, Blood.

[15]  L. Zon,et al.  Dynamic Control of Enhancer Repertoires Drives Lineage and Stage-Specific Transcription during Hematopoiesis. , 2016, Developmental cell.

[16]  W. V. van IJcken,et al.  Control of developmentally primed erythroid genes by combinatorial co-repressor actions , 2015, Nature Communications.

[17]  W. V. van IJcken,et al.  Sp1/Sp3 transcription factors regulate hallmarks of megakaryocyte maturation and platelet formation and function. , 2015, Blood.

[18]  K. Quinlan,et al.  Differential regulation of the α-globin locus by Krüppel-like factor 3 in erythroid and non-erythroid cells , 2014, BMC Molecular Biology.

[19]  Mona Singh,et al.  De novo prediction of DNA-binding specificities for Cys2His2 zinc finger proteins , 2013, Nucleic acids research.

[20]  Nathaniel J. Pope,et al.  Transcriptional mechanisms underlying hemoglobin synthesis. , 2013, Cold Spring Harbor perspectives in medicine.

[21]  Luca Pinello,et al.  Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis. , 2012, Developmental cell.

[22]  John A. Todd,et al.  Proteome-Wide Analysis of Disease-Associated SNPs That Show Allele-Specific Transcription Factor Binding , 2012, PLoS genetics.

[23]  Raymond K. Auerbach,et al.  An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.

[24]  T. Bailey,et al.  Inferring direct DNA binding from ChIP-seq , 2012, Nucleic acids research.

[25]  Michael P. Snyder,et al.  A core erythroid transcriptional network is repressed by a master regulator of myelo-lymphoid differentiation , 2012, Proceedings of the National Academy of Sciences.

[26]  A. Cantor,et al.  Role of ZBP-89 in human globin gene regulation and erythroid differentiation. , 2011, Blood.

[27]  E. Pedersen,et al.  G4-DNA Formation in the HRAS Promoter and Rational Design of Decoy Oligonucleotides for Cancer Therapy , 2011, PloS one.

[28]  Douglas R Higgs,et al.  Polycomb eviction as a new distant enhancer function. , 2011, Genes & development.

[29]  Philip Machanick,et al.  MEME-ChIP: motif analysis of large DNA datasets , 2011, Bioinform..

[30]  Manikandan Paramasivam,et al.  The KRAS Promoter Responds to Myc-associated Zinc Finger and Poly(ADP-ribose) Polymerase 1 Proteins, Which Recognize a Critical Quadruplex-forming GA-element* , 2010, The Journal of Biological Chemistry.

[31]  L. Huang,et al.  Advances in understanding the pathogenesis of primary familial and congenital polycythaemia , 2010, British journal of haematology.

[32]  Vip Viprakasit,et al.  Adventitious changes in long-range gene expression caused by polymorphic structural variation and promoter competition , 2009, Proceedings of the National Academy of Sciences.

[33]  Nathaniel D. Heintzman,et al.  Histone modifications at human enhancers reflect global cell-type-specific gene expression , 2009, Nature.

[34]  M. Mann,et al.  MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.

[35]  R. Memmott,et al.  A novel G-quadruplex-forming GGA repeat region in the c-myb promoter is a critical regulator of promoter activity , 2008, Nucleic acids research.

[36]  D. Higgs,et al.  Long‐range chromosomal interactions regulate the timing of the transition between poised and active gene expression , 2007 .

[37]  William Stafford Noble,et al.  Quantifying similarity between motifs , 2007, Genome Biology.

[38]  Veronica J. Buckle,et al.  Coregulated human globin genes are frequently in spatial proximity when active , 2006, The Journal of cell biology.

[39]  A. Shakya,et al.  Overexpression of Serum Amyloid A-Activating Factor 1 Inhibits Cell Proliferation by the Induction of Cyclin-Dependent Protein Kinase Inhibitor p21WAF-1/Cip-1/Sdi-1 Expression1 , 2004, The Journal of Immunology.

[40]  T. Tai,et al.  Regulation of the rat phenylethanolamine N-methyltransferase gene by transcription factors Sp1 and MAZ. , 2003, Molecular pharmacology.

[41]  F. Grosveld,et al.  Impaired hematopoiesis in mice lacking the transcription factor Sp3. , 2003, Blood.

[42]  A. Shakya,et al.  Protein Kinase A Signaling Pathway Regulates Transcriptional Activity of SAF-1 by Unmasking Its DNA-binding Domains* , 2003, Journal of Biological Chemistry.

[43]  S. Kishikawa,et al.  Transcriptional regulation by zinc-finger proteins Sp1 and MAZ involves interactions with the same cis-elements. , 2003, International journal of molecular medicine.

[44]  B. Ray,et al.  Cytokine-Responsive Induction of SAF-1 Activity Is Mediated by a Mitogen-Activated Protein Kinase Signaling Pathway , 2002, Molecular and Cellular Biology.

[45]  A. Sarai,et al.  Two Consecutive Zinc Fingers in Sp1 and in MAZ Are Essential for Interactions with cis-Elements* , 2001, The Journal of Biological Chemistry.

[46]  W. Rutter,et al.  Unusual DNA structure of the diabetes susceptibility locus IDDM2 and its effect on transcription by the insulin promoter factor Pur-1/MAZ. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[47]  K. Chin,et al.  Two‐phase liquid culture system models normal human adult erythropoiesis at the molecular level , 2000, European journal of haematology.

[48]  H. Handa,et al.  The DNA-binding and transcriptional activities of MAZ, a myc-associated zinc finger protein, are regulated by casein kinase II. , 1999, Biochemical and biophysical research communications.

[49]  T. Shenk,et al.  Activation of the adenovirus major late promoter by transcription factors MAZ and Sp1 , 1997, Journal of virology.

[50]  D. Seshasayee,et al.  Functional interaction of GATA1 with erythroid Kruppel-like factor and Sp1 at defined erythroid promoters , 1996 .

[51]  G. Stamatoyannopoulos,et al.  Transcriptional activation of human adult alpha-globin genes by hypersensitive site-40 enhancer: function of nuclear factor-binding motifs occupied in erythroid cells. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[52]  S. Orkin,et al.  Functional synergy and physical interactions of the erythroid transcription factor GATA-1 with the Krüppel family proteins Sp1 and EKLF , 1995, Molecular and cellular biology.

[53]  A. Patel,et al.  MAZ‐dependent termination between closely spaced human complement genes. , 1994, The EMBO journal.

[54]  N. Andrews,et al.  A rapid micropreparation technique for extraction of DNA-binding proteins from limiting numbers of mammalian cells. , 1991, Nucleic acids research.

[55]  R. Hardison,et al.  Evolution of hemoglobin loci and their regulatory elements. , 2018, Blood cells, molecules & diseases.

[56]  J. Ranish,et al.  Quantitative Proteomic Identification of MAZ as a Transcriptional Regulator of Muscle-Specific Genes in Skeletal and Cardiac Myocytes , 2008, Molecular and Cellular Biology.

[57]  M. Mann,et al.  Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips , 2007, Nature Protocols.

[58]  H. Beug,et al.  Different steroids co-regulate long-term expansion versus terminal differentiation in primary human erythroid progenitors. , 2005, Blood.

[59]  D. Seshasayee,et al.  Functional interaction of GATA1 with erythroid Krüppel-like factor and Sp1 at defined erythroid promoters. , 1996, Blood.