Collective behavior in gene regulation: The cell is an oscillator, the cell cycle a developmental process
暂无分享,去创建一个
Robert R Klevecz | Caroline M. Li | R. Klevecz | P. Frankel | Ian M Marcus | Caroline M Li | Paul H Frankel | Ian Marcus | Paul Frankel
[1] Robert R. Klevecz,et al. SELF-ORGANIZATION IN BIOLOGICAL TISSUES: ANALYSIS OF ASYNCHRONOUS AND SYNCHRONOUS PERIODICITY, TURBULENCE AND SYNCHRONOUS CHAOS EMERGENT IN COUPLED CHAOTIC ARRAYS , 1992 .
[2] R. Klevecz,et al. Amplification and damping of deterministic noise in coupled cellular arrays , 1993 .
[3] J. Derisi,et al. Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise , 2006, Nature.
[4] S. L. Wong,et al. Towards a proteome-scale map of the human protein–protein interaction network , 2005, Nature.
[5] Ruedi Aebersold,et al. Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry , 2005, Nature Methods.
[6] David Lloyd,et al. Generation and maintenance of synchrony in Saccharomyces cerevisiae continuous culture. , 2003, Experimental cell research.
[7] R. Klevecz,et al. Tuning in the transcriptome: basins of attraction in the yeast cell cycle , 2000, Cell proliferation.
[8] J. Kim,et al. Geometry of gene expression dynamics , 2002, Bioinform..
[9] R. Klevecz,et al. Quantized generation time in mammalian cells as an expression of the cellular clock. , 1976, Proceedings of the National Academy of Sciences of the United States of America.
[10] Nichole L. King,et al. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry , 2004, Genome Biology.
[11] Phenotypic heterogeneity and genotypic instability in coupled cellular arrays , 1998 .
[12] Robert R Klevecz,et al. A rapid genome-scale response of the transcriptional oscillator to perturbation reveals a period-doubling path to phenotypic change , 2006, Proceedings of the National Academy of Sciences.
[13] Ernest Fraenkel,et al. Sequence analysis A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data , 2006 .
[14] E. C. Peters. A polymeric solution for enriching the phosphoproteome , 2005, Nature Methods.
[15] I. Prigogine,et al. Fluctuations in nonequilibrium systems. , 1971, Proceedings of the National Academy of Sciences of the United States of America.
[16] B. Hess,et al. Oscillatory phenomena in biochemistry. , 1971, Annual review of biochemistry.
[17] A. Kudlicki,et al. Logic of the Yeast Metabolic Cycle: Temporal Compartmentalization of Cellular Processes , 2005, Science.
[18] A. Goldbeter,et al. Toward a detailed computational model for the mammalian circadian clock , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[19] D. Searcy. Metabolic integration during the evolutionary origin of mitochondria , 2003, Cell Research.
[20] R. Klevecz,et al. Quasi‐Exponential Generation Time Distributions From A Limit Cycle Oscillator , 1985, Cell and tissue kinetics.
[21] J. A. Smith,et al. Mammalian cell cycles need two random transitions , 1980, Cell.
[22] Michael Ruogu Zhang,et al. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. , 1998, Molecular biology of the cell.
[23] Neal S. Holter,et al. Fundamental patterns underlying gene expression profiles: simplicity from complexity. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[24] C. M. Li,et al. Evolution of the clock from yeast to man by period-doubling folds in the cellular oscillator. , 2007, Cold Spring Harbor symposia on quantitative biology.
[25] K. Searcy,et al. A MYCOPLASMA‐LIKE ARCHAEBACTERIUM POSSIBLY RELATED TO THE NUCLEUS AND CYTOPLASM OF EUKARYOTIC CELLS , 1981, Annals of the New York Academy of Sciences.
[26] Nedra Rogers,et al. Mammalian , 2007 .
[27] Alfredo Colosimo,et al. Gene expression waves , 2007, The FEBS journal.
[28] Fran Lewitter,et al. Intragenic tandem repeats generate functional variability , 2005, Nature Genetics.
[29] A. Goldbeter,et al. Control of oscillating glycolysis of yeast by stochastic, periodic, and steady source of substrate: a model and experimental study. , 1975, Proceedings of the National Academy of Sciences of the United States of America.
[30] A. E. Hirsh,et al. Evolutionary Rate in the Protein Interaction Network , 2002, Science.
[31] S. Kauffman,et al. Cellular clocks and oscillators. , 1984, International review of cytology.
[32] D. Botstein,et al. Singular value decomposition for genome-wide expression data processing and modeling. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[33] David Lloyd,et al. Respiratory oscillations in yeast: clock‐driven mitochondrial cycles of energization , 2002, FEBS letters.
[34] D. Botstein,et al. Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[35] N. Friedman,et al. Stochastic protein expression in individual cells at the single molecule level , 2006, Nature.
[36] David Botstein,et al. Processing and modeling genome-wide expression data using singular value decomposition , 2001, SPIE BiOS.
[37] Ronald W. Davis,et al. A genome-wide transcriptional analysis of the mitotic cell cycle. , 1998, Molecular cell.
[38] Jeffrey W. Smith,et al. Stochastic Gene Expression in a Single Cell , 2022 .
[39] Robert R. Klevecz,et al. Dynamic architecture of the yeast cell cycle uncovered by wavelet decomposition of expression microarray data , 2000, Functional & Integrative Genomics.
[40] Sui Huang,et al. Gene Expression Dynamics Inspector (GEDI): for integrative analysis of expression profiles , 2003, Bioinform..
[41] H. Kitano,et al. Regulation of yeast oscillatory dynamics , 2007, Proceedings of the National Academy of Sciences.
[42] D. Murray,et al. A genomewide oscillation in transcription gates DNA replication and cell cycle. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[43] J. Warrington,et al. Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes. , 2000, Physiological genomics.