Molecular mechanism of engineered Zymomonas mobilis to furfural and acetic acid stress
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M. Nawaz | T. Younis | Mingxiong He | Guoquan Hu | Bo Wu | Renbin Liu | Weiting Wang | Panting Liu | M. F. Kulyar | Mao Chen | Samina Shabbir | Prerona Boruah | Yonghua Dai | Lingling Sun | Qiyu Gou
[1] Celso Tadao Miasaki,et al. Valorization of semi-solid by-product from distillation of cellulosic ethanol into blends for heating and power , 2021, Waste Disposal & Sustainable Energy.
[2] A. Al-Gheethi,et al. Influence of Nitrogen and Phosphorus on Microalgal Growth, Biomass, Lipid, and Fatty Acid Production: An Overview , 2021, Cells.
[3] P. Talia,et al. Bioprospecting of microbial strains for biofuel production: metabolic engineering, applications, and challenges , 2021, Biotechnology for Biofuels.
[4] M. Nawaz,et al. Insight of transcriptional regulators reveals the tolerance mechanism of carpet-grass (Axonopus compressus) against drought , 2020, BMC plant biology.
[5] J. Peters,et al. A High-efficacy CRISPRi System for Gene Function Discovery in Zymomonas mobilis , 2020, bioRxiv.
[6] P. Kynclova,et al. Composite index as a measure on achieving Sustainable Development Goal 9 (SDG-9) industry-related targets: The SDG-9 index , 2020 .
[7] Mingxiong He,et al. Development and characterization of acidic-pH-tolerant mutants of Zymomonas mobilis through adaptation and next-generation sequencing-based genome resequencing and RNA-Seq , 2020, Biotechnology for Biofuels.
[8] Guoquan Hu,et al. Biochar-mediated enhanced ethanol fermentation (BMEEF) in Zymomonas mobilis under furfural and acetic acid stress , 2020, Biotechnology for Biofuels.
[9] M. Himmel,et al. Metabolic engineering of Zymomonas mobilis for anaerobic isobutanol production , 2020, Biotechnology for Biofuels.
[10] A. Afendra,et al. Saccharomyces cerevisiae and its industrial applications , 2020, AIMS microbiology.
[11] Mingxiong He,et al. Genome shuffling enhances stress tolerance of Zymomonas mobilis to two inhibitors , 2019, Biotechnology for Biofuels.
[12] Yingjun Li,et al. Primed acquisition and microhomology-mediated end-joining cooperate to confer specific CRISPR immunity against invasive genetic elements , 2019, bioRxiv.
[13] Yung-Hua Li,et al. ClpP is required for proteolytic regulation of type II toxin–antitoxin systems and persister cell formation in Streptococcus mutans , 2019, Access microbiology.
[14] J. Reed,et al. 2H and 13C metabolic flux analysis elucidates in vivo thermodynamics of the ED pathway in Zymomonas mobilis. , 2019, Metabolic engineering.
[15] Chang-Ro Lee,et al. Distinct Roles of Outer Membrane Porins in Antibiotic Resistance and Membrane Integrity in Escherichia coli , 2019, Front. Microbiol..
[16] Chao-Jung Wu,et al. Substantial Contribution of SmeDEF, SmeVWX, SmQnr, and Heat Shock Response to Fluoroquinolone Resistance in Clinical Isolates of Stenotrophomonas maltophilia , 2019, Front. Microbiol..
[17] R. Gutiérrez-Ríos,et al. Phenotypic and genomic analysis of Zymomonas mobilis ZM4 mutants with enhanced ethanol tolerance , 2019, Biotechnology reports.
[18] M. Himmel,et al. Prediction and characterization of promoters and ribosomal binding sites of Zymomonas mobilis in system biology era , 2019, Biotechnology for Biofuels.
[19] Xiaobing Jiang,et al. New technologies provide more metabolic engineering strategies for bioethanol production in Zymomonas mobilis , 2019, Applied Microbiology and Biotechnology.
[20] Qi-li Zhu,et al. Engineered Zymomonas mobilis tolerant to acetic acid and low pH via multiplex atmospheric and room temperature plasma mutagenesis , 2019, Biotechnology for Biofuels.
[21] Sayandeep Gupta,et al. The oligomeric plasticity of Hsp20 of Sulfolobus acidocaldarius protects environment-induced protein aggregation and membrane destabilization. , 2018, Biochimica et biophysica acta. Biomembranes.
[22] Qiaoning He,et al. Progress and perspective on lignocellulosic hydrolysate inhibitor tolerance improvement in Zymomonas mobilis , 2018, Bioresources and Bioprocessing.
[23] Martin Eisenacher,et al. The PRIDE database and related tools and resources in 2019: improving support for quantification data , 2018, Nucleic Acids Res..
[24] Hui Liu,et al. Modified TCA/acetone precipitation of plant proteins for proteomic analysis , 2018, bioRxiv.
[25] Sean J McIlwain,et al. Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032 , 2018, Biotechnology for Biofuels.
[26] K. Selim,et al. Bioethanol a Microbial Biofuel Metabolite; New Insights of Yeasts Metabolic Engineering , 2018 .
[27] Daehwan Kim. Physico-Chemical Conversion of Lignocellulose: Inhibitor Effects and Detoxification Strategies: A Mini Review , 2018, Molecules.
[28] R. Tommasi,et al. Acinetobacter baumannii OmpA Is a Selective Antibiotic Permeant Porin. , 2017, ACS infectious diseases.
[29] Ye Wang,et al. JAK signaling regulates germline cyst breakdown and primordial follicle formation in mice , 2017, Biology Open.
[30] M. G. Pinho,et al. The ClpXP protease is dispensable for degradation of unfolded proteins in Staphylococcus aureus , 2017, Scientific Reports.
[31] Mamoru Yamada,et al. Thermotolerant genes essential for survival at a critical high temperature in thermotolerant ethanologenic Zymomonas mobilis TISTR 548 , 2017, Biotechnology for Biofuels.
[32] Yu‐Fan Liu,et al. Effect of acetic acid on ethanol production by Zymomonas mobilis mutant strains through continuous adaptation , 2017, BMC Biotechnology.
[33] T. Gorr. Hypometabolism as the ultimate defence in stress response: how the comparative approach helps understanding of medically relevant questions , 2017, Acta physiologica.
[34] Syma Khalid,et al. OmpA: A Flexible Clamp for Bacterial Cell Wall Attachment. , 2016, Structure.
[35] D. Zheng,et al. RNA‐seq transcriptome analysis of a Pseudomonas strain with diversified catalytic properties growth under different culture medium , 2016, MicrobiologyOpen.
[36] C. V. Rao,et al. High‐throughput sequencing reveals adaptation‐induced mutations in pentose‐fermenting strains of Zymomonas mobilis , 2015, Biotechnology and bioengineering.
[37] A. Doucette,et al. Comparison of sodium dodecyl sulfate depletion techniques for proteome analysis by mass spectrometry. , 2015, Journal of chromatography. A.
[38] Jie Bao,et al. Transcriptome analysis of Zymomonas mobilis ZM4 reveals mechanisms of tolerance and detoxification of phenolic aldehyde inhibitors from lignocellulose pretreatment , 2015, Biotechnology for Biofuels.
[39] F. Tan,et al. Adaptive laboratory evolution of ethanologenic Zymomonas mobilis strain tolerant to furfural and acetic acid inhibitors , 2015, Applied Microbiology and Biotechnology.
[40] L. Milanesi,et al. DnaK as Antibiotic Target: Hot Spot Residues Analysis for Differential Inhibition of the Bacterial Protein in Comparison with the Human HSP70 , 2015, PloS one.
[41] Qi-li Zhu,et al. Improving furfural tolerance of Zymomonas mobilis by rewiring a sigma factor RpoD protein , 2015, Applied Microbiology and Biotechnology.
[42] Ming-xiong He,et al. Transcriptional analysis of adaptation to high glucose concentrations in Zymomonas mobilis , 2015, Applied Microbiology and Biotechnology.
[43] Anupama Ghosh. Small heat shock proteins (HSP12, HSP20 and HSP30) play a role in Ustilago maydis pathogenesis. , 2014, FEMS microbiology letters.
[44] Min Zhang,et al. Insights into acetate toxicity in Zymomonas mobilis 8b using different substrates , 2014, Biotechnology for Biofuels.
[45] Hanna S. Yuan,et al. Structure and function of TatD exonuclease in DNA repair , 2014, Nucleic acids research.
[46] T. Nissan,et al. Interrelations between translation and general mRNA degradation in yeast , 2014, Wiley interdisciplinary reviews. RNA.
[47] Brian H. Davison,et al. Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics , 2014, Front. Microbiol..
[48] Matthew Fraser,et al. InterProScan 5: genome-scale protein function classification , 2014, Bioinform..
[49] Wu Bo,et al. Construction and Characterization of Restriction-Modification Deficient Mutants in Zymomonas mobilis ZM4: Construction and Characterization of Restriction-Modification Deficient Mutants in Zymomonas mobilis ZM4 , 2013 .
[50] Min Zhang,et al. Inhibition of growth of Zymomonas mobilis by model compounds found in lignocellulosic hydrolysates , 2013, Biotechnology for Biofuels.
[51] B. Tjaden,et al. Computational analysis of bacterial RNA-Seq data , 2013, Nucleic acids research.
[52] L. Olsson,et al. The influence of HMF and furfural on redox-balance and energy-state of xylose-utilizing Saccharomyces cerevisiae , 2013, Biotechnology for Biofuels.
[53] Qi-li Zhu,et al. Transcriptome profiling of Zymomonas mobilis under ethanol stress , 2012, Biotechnology for Biofuels.
[54] Qi-li Zhu,et al. Transcriptome profiling of Zymomonas mobilis under furfural stress , 2012, Applied Microbiology and Biotechnology.
[55] N. Jawali,et al. Involvement of pnp in survival of UV radiation in Escherichia coli K-12. , 2012, Microbiology.
[56] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[57] S. Gannavaram,et al. Involvement of TatD nuclease during programmed cell death in the protozoan parasite Trypanosoma brucei , 2012, Molecular microbiology.
[58] P. Rogers,et al. Genome-wide transcriptomic analysis of a flocculent strain of Zymomonas mobilis , 2012, Applied Microbiology and Biotechnology.
[59] C. Wyman,et al. Supplementation with xylanase and β-xylosidase to reduce xylo-oligomer and xylan inhibition of enzymatic hydrolysis of cellulose and pretreated corn stover , 2011, Biotechnology for biofuels.
[60] Dale A Pelletier,et al. Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae , 2010, Proceedings of the National Academy of Sciences.
[61] Dale A Pelletier,et al. The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors , 2010, BMC Microbiology.
[62] Cole Trapnell,et al. Role of Rodent Secondary Motor Cortex in Value-based Action Selection Nih Public Access Author Manuscript , 2006 .
[63] Min Zhang,et al. Development of a high-throughput method to evaluate the impact of inhibitory compounds from lignocellulosic hydrolysates on the growth of Zymomonas mobilis. , 2009, Journal of biotechnology.
[64] D. G. Gibson,et al. Enzymatic assembly of DNA molecules up to several hundred kilobases , 2009, Nature Methods.
[65] M. Mann,et al. Universal sample preparation method for proteome analysis , 2009, Nature Methods.
[66] M. Winterhalter,et al. The porin and the permeating antibiotic: a selective diffusion barrier in Gram-negative bacteria , 2008, Nature Reviews Microbiology.
[67] Brad T. Sherman,et al. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.
[68] Rolf Backofen,et al. IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions , 2008, Bioinform..
[69] David J. Baumler,et al. Acid stress damage of DNA is prevented by Dps binding in Escherichia coli O157:H7 , 2008, BMC Microbiology.
[70] S. Salzberg,et al. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake , 2007, Genome Biology.
[71] Y. Hua,et al. RadA: A protein involved in DNA damage repair processes of Deinococcus radiodurans R1 , 2006 .
[72] Peter F. Stadler,et al. Memory Efficient Folding Algorithms for Circular RNA Secondary Structures , 2006, German Conference on Bioinformatics.
[73] J. Yoon,et al. Search for Apoptotic Nucleases in Yeast , 2005, Journal of Biological Chemistry.
[74] John W. Foster,et al. Escherichia coli acid resistance: tales of an amateur acidophile , 2004, Nature Reviews Microbiology.
[75] M. Wachi,et al. Transcriptional Analysis of the ostA/imp Gene Involved in Organic Solvent Sensitivity in Escherichia coli , 2004, Bioscience, biotechnology, and biochemistry.
[76] H. Nikaido. Molecular Basis of Bacterial Outer Membrane Permeability Revisited , 2003, Microbiology and Molecular Biology Reviews.
[77] R. Burne,et al. Regulation and Physiological Significance of ClpC and ClpP in Streptococcus mutans , 2002, Journal of bacteriology.
[78] M. Akagawa,et al. Oxidative Deamination by Hydrogen Peroxide in the Presence of Metals , 2002, Free radical research.
[79] Steven Salzberg,et al. A probabilistic method for identifying start codons in bacterial genomes , 2001, Bioinform..
[80] J. Hoeijmakers,et al. XAB2, a Novel Tetratricopeptide Repeat Protein Involved in Transcription-coupled DNA Repair and Transcription* , 2000, The Journal of Biological Chemistry.
[81] P. van Gelder,et al. Structure and function of bacterial outer membrane proteins: barrels in a nutshell , 2000, Molecular microbiology.
[82] S. Raina,et al. A new heat‐shock gene, ppiD, encodes a peptidyl–prolyl isomerase required for folding of outer membrane proteins in Escherichia coli , 1998, The EMBO journal.
[83] R. Nielsen,et al. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. , 1998, Genetics.
[84] K. Crandall,et al. Rhodopsin evolution in the dark , 1997, Nature.
[85] W. Messier,et al. Episodic adaptive evolution of primate lysozymes , 1997, Nature.
[86] T. Katayama,et al. Disruption of thehslUGene, Which Encodes an ATPase Subunit of the Eukaryotic 26S Proteasome Homolog inEscherichia coli,Suppresses the Temperature-SensitivednaA46Mutation , 1996 .
[87] H. Akashi,et al. Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. , 1995, Genetics.
[88] H. Nakajima,et al. Cloning of organic solvent tolerance gene ostA that determines n-hexane tolerance level in Escherichia coli , 1994, Applied and environmental microbiology.
[89] E. Sugawara,et al. Pore-forming activity of OmpA protein of Escherichia coli. , 1992, The Journal of biological chemistry.
[90] D. B. Nickel. Process development for platform chemical production from agricultural and forestry residues , 2021 .
[91] Yun Yu,et al. Recent advances and challenges of inter-disciplinary biomass valorization by integrating hydrothermal and biological techniques , 2021 .
[92] Xuegong Zhang,et al. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data , 2010, Bioinform..
[93] Hilde van der Togt,et al. Publisher's Note , 2003, J. Netw. Comput. Appl..
[94] T. A. Hall,et al. BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .
[95] T. Katayama,et al. Disruption of the hslU gene, which encodes an ATPase subunit of the eukaryotic 26S proteasome homolog in Escherichia coli, suppresses the temperature-sensitive dnaA46 mutation. , 1996, Biochemical and biophysical research communications.
[96] R. Benz. Structure and function of porins from gram-negative bacteria. , 1988, Annual review of microbiology.