Efficient profile-likelihood confidence intervals for capture-recapture models

In a capture-recapture analysis, uncertainty in the parameter estimates is usually expressed by presenting classical Wald-type confidence intervals. This approach involves (1) the assumption that the maximum likelihood estimates are asymptotically normal and (2) numerical computation of the variance-covariance matrix of these estimates. When the sample size is small or when the estimates are on the boundary of their domain, a Wald confidence interval often performs badly. A natural alternative is to use profile-likelihood confidence intervals. In general, these intervals require a greater amount of computation. We propose a new implementation of this approach that is efficient, both in reducing the amount of computation and in coping with boundary estimates. We also show how profile-likelihood confidence intervals can be adjusted for overdispersion. Simulations were used to check whether nominal coverage levels were attained, and allowed us to compare this approach with the classical Wald procedure. We illustrate this work by considering a multi-state model for a sooty shearwater (Puffinus griseus) population.

[1]  E. Beale,et al.  Confidence Regions in Non‐Linear Estimation , 1960 .

[2]  Roger Pradel,et al.  Competing events, mixtures of information and multistratum recapture models , 1999 .

[3]  David A. Ratkowsky,et al.  Handbook of nonlinear regression models , 1990 .

[4]  R. Cormack Estimates of survival from the sighting of marked animals , 1964 .

[5]  David R. Anderson,et al.  Modeling Survival and Testing Biological Hypotheses Using Marked Animals: A Unified Approach with Case Studies , 1992 .

[6]  David Fletcher,et al.  Titi (sooty shearwaters) on Whero Island: Analysis of historic data using modern techniques , 2001 .

[7]  Olivier Gimenez,et al.  Parameter Redundancy in Multistate Capture‐Recapture Models , 2003 .

[8]  Stephen T. Buckland,et al.  A Modified Analysis of the Jolly-Seber Capture-Recapture Model , 1980 .

[9]  David R. Anderson,et al.  Capture-Recapture and Removal Methods for Sampling Closed Populations , 1983 .

[10]  Jean-Dominique Lebreton,et al.  The future of population dynamic studies using marked individuals: A statistician's perspective , 1995 .

[11]  K. Liang,et al.  Asymptotic Properties of Maximum Likelihood Estimators and Likelihood Ratio Tests under Nonstandard Conditions , 1987 .

[12]  Robert B. Schnabel,et al.  Computational experience with confidence intervals for nonlinear least squares , 1986 .

[13]  Stephen E. Fienberg,et al.  Discrete Multivariate Analysis: Theory and Practice , 1976 .

[14]  Carl J. Schwarz,et al.  Estimating migration rates using tag-recovery data , 1993 .

[15]  D. Roff The evolution of life histories : theory and analysis , 1992 .

[16]  G. Jolly EXPLICIT ESTIMATES FROM CAPTURE-RECAPTURE DATA WITH BOTH DEATH AND IMMIGRATION-STOCHASTIC MODEL. , 1965, Biometrika.

[17]  Gwilym M. Jenkins,et al.  Time series analysis, forecasting and control , 1972 .

[18]  Roger Pradel,et al.  A Proposal for a Goodness‐of‐Fit Test to the Arnason‐Schwarz Multisite Capture‐Recapture Model , 2003, Biometrics.

[19]  Robert Tibshirani,et al.  An Introduction to the Bootstrap , 1994 .

[20]  Kenneth H. Pollock,et al.  CAPTURE-RECAPTURE STUDIES FOR MULTIPLE STRATA INCLUDING NON-MARKOVIAN TRANSITIONS , 1993 .

[21]  A. N. Arnason,et al.  Parameter estimates from mark-recapture experiments on two populations subject to migration and death , 1972, Researches on Population Ecology.

[22]  B. Morgan,et al.  A model with first-year variation for ring-recovery data , 1989 .

[23]  S. Moolgavkar,et al.  A Method for Computing Profile-Likelihood- Based Confidence Intervals , 1988 .

[24]  Sanford Weisberg,et al.  Confidence Curves in Nonlinear Regression , 1990 .

[25]  G. Seber A NOTE ON THE MULTIPLE-RECAPTURE CENSUS. , 1965, Biometrika.

[26]  Cormack Rm,et al.  Interval estimation for mark-recapture studies of closed populations. , 1992 .

[27]  A. N. Arnason,et al.  The estimation of population size, migration rates and survival in a stratified population , 1973, Researches on Population Ecology.

[28]  James E. Hines,et al.  Are adult nonbreeders prudent parents? The kittiwake model , 1998 .

[29]  D. Hudson Interval Estimation from the Likelihood Function , 1971 .

[30]  Luis A. Escobar,et al.  Teaching about Approximate Confidence Regions Based on Maximum Likelihood Estimation , 1995 .

[31]  R. Huggins On the statistical analysis of capture experiments , 1989 .

[32]  J. D. Lebreton,et al.  Multistate recapture models: Modelling incomplete individual histories , 2002 .

[33]  A. Agresti Simple capture-recapture models permitting unequal catchability and variable sampling effort. , 1994, Biometrics.

[34]  M. Evans,et al.  An Application of Profile-Likelihood Based Confidence Interval to Capture: Recapture Estimators , 1996 .

[35]  G. Seber,et al.  Capture-recapture: Before and after EURING 2000 , 2002 .

[36]  C. Lloyd Accurate confidence intervals from recapture experiments , 1995 .

[37]  C. M. Lessells,et al.  The Evolution of Life Histories , 1994 .

[38]  J. Clobert,et al.  Capture-recapture and evolutionary ecology: A difficult wedding? , 1995 .

[39]  K. Burnham,et al.  Program MARK: survival estimation from populations of marked animals , 1999 .

[40]  George E. P. Box,et al.  Time Series Analysis: Forecasting and Control , 1977 .

[41]  Kenneth H. Pollock,et al.  Design and Analysis Methods for Fish Survival Experiments Based on Release-Recapture. , 1988 .

[42]  M. Conroy,et al.  Analysis and Management of Animal Populations , 2002 .

[43]  Paul H. Garthwaite,et al.  Quantifying Precision of Mark-Recapture Estimates Using the Bootstrap and Related Methods , 1991 .

[44]  Gwilym M. Jenkins,et al.  Time series analysis, forecasting and control , 1971 .

[45]  Paul H. Garthwaite,et al.  Generating Monte Carlo Confidence Intervals by the Robbins-Monro Process , 1992 .

[46]  Robert B. Schnabel,et al.  Computational experience with confidence intervals for nonlinear least squares , 1987 .

[47]  J. Nichols,et al.  Estimation by capture-recapture of recruitment and dispersal over several sites , 2003 .

[48]  Anthony C. Davison,et al.  Bootstrap Methods and Their Application , 1998 .

[49]  D. G. Watts,et al.  Relative Curvature Measures of Nonlinearity , 1980 .

[50]  James D. Nichols,et al.  The use of multi-state capture-recapture models to address questions in evolutionary ecology , 1995 .