Modeling the Diving Behavior of Whales: A Latent-Variable Approach with Feedback and Semi-Markovian Components

Recent years have seen a fast-growing body of literature concerned with the statistical modeling of animal movement in the two horizontal dimensions. On the other hand, there is very little statistical work that deals with animal movement in the vertical dimension. We present an approach that provides an important step in analyzing such data. In particular, we introduce a hidden Markov-type modeling approach for time series comprising the depths of a diving marine mammal, thus modeling movement in the water column. We first develop a baseline Markov-switching model, which is then extended to incorporate feedback and semi-Markovian components, motivated by the observations made for a particular species, Blainville’s beaked whale (Mesoplodon densirostris). The application of the proposed model to the beaked whale data reveals both strengths and weaknesses of the suggested modeling framework. The framework is general enough that we anticipate that it can be used for many other species given minor changes in the model structure.

[1]  Jay M Ver Hoef,et al.  Discretized and Aggregated: Modeling Dive Depth of Harbor Seals from Ordered Categorical Data with Temporal Autocorrelation , 2012, Biometrics.

[2]  P. Tyack,et al.  Extreme diving of beaked whales , 2006, Journal of Experimental Biology.

[3]  Lucas N Joppa,et al.  Understanding movement data and movement processes: current and emerging directions. , 2008, Ecology letters.

[4]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[5]  R. W. Baird,et al.  Diel variation in beaked whale diving behavior , 2008 .

[6]  Y. Guédon Estimating Hidden Semi-Markov Chains From Discrete Sequences , 2003 .

[7]  D L Borchers,et al.  Using Hidden Markov Models to Deal with Availability Bias on Line Transect Surveys , 2013, Biometrics.

[8]  Christopher W. Clark,et al.  Beaked Whales Respond to Simulated and Actual Navy Sonar , 2011, PloS one.

[9]  Len Thomas,et al.  Changes in spatial and temporal distribution and vocal behavior of Blainville's beaked whales (Mesoplodon densirostris) during multiship exercises with mid‐frequency sonar , 2011 .

[10]  Roland Langrock,et al.  Flexible Latent‐State Modelling of Old Faithful's Eruption Inter‐Arrival Times in 2009 , 2012 .

[11]  A. Munk,et al.  Hidden Markov models for circular and linear-circular time series , 2006, Environmental and Ecological Statistics.

[12]  Christophe Guinet,et al.  Assessment of scale-dependent foraging behaviour in southern elephant seals incorporating the vertical dimension: a development of the First Passage Time method. , 2008, The Journal of animal ecology.

[13]  Michael Kock,et al.  One size does not fit all: flexible models are required to understand animal movement across scales. , 2011, The Journal of animal ecology.

[14]  Roland Langrock,et al.  Markov-Modulated Nonhomogeneous Poisson Processes for Modeling Detections in Surveys of Marine Mammal Abundance , 2013 .

[15]  J. M. van der Hoop,et al.  Absolute probability estimates of lethal vessel strikes to North Atlantic right whales in Roseway Basin, Scotian Shelf. , 2012, Ecological applications : a publication of the Ecological Society of America.

[16]  Keith Harris,et al.  Flexible continuous-time modelling for heterogeneous animal movement , 2013 .

[17]  J. Ramsay Monotone Regression Splines in Action , 1988 .

[18]  Michael Dowd,et al.  Estimating behavioral parameters in animal movement models using a state-augmented particle filter. , 2011, Ecology.

[19]  R. W. Baird,et al.  Could beaked whales get the bends? Effect of diving behaviour and physiology on modelled gas exchange for three species: Ziphius cavirostris, Mesoplodon densirostris and Hyperoodon ampullatus , 2009, Respiratory Physiology & Neurobiology.

[20]  Juan M. Morales,et al.  EXTRACTING MORE OUT OF RELOCATION DATA: BUILDING MOVEMENT MODELS AS MIXTURES OF RANDOM WALKS , 2004 .

[21]  Brett T. McClintock,et al.  Combining individual animal movement and ancillary biotelemetry data to investigate population-level activity budgets , 2013 .

[22]  Jennifer Hammock,et al.  Beaked Whale Strandings and Naval Exercises , 2009 .

[23]  S Schliehe-Diecks,et al.  On the application of mixed hidden Markov models to multiple behavioural time series , 2012, Interface Focus.

[24]  Toby A Patterson,et al.  Classifying movement behaviour in relation to environmental conditions using hidden Markov models. , 2009, The Journal of animal ecology.

[25]  David Raubenheimer,et al.  Modeling Time Series of Animal Behavior by Means of a Latent‐State Model with Feedback , 2008, Biometrics.

[26]  Roland Langrock,et al.  Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions. , 2012, Ecology.

[27]  R. Altman Mixed Hidden Markov Models , 2007 .

[28]  D.S. Houser,et al.  A method for modeling marine mammal movement and behavior for environmental impact assessment , 2006, IEEE Journal of Oceanic Engineering.

[29]  Edward A. Codling,et al.  Random walk models in biology , 2008, Journal of The Royal Society Interface.

[30]  Cameron G. Walker,et al.  Classification of animal dive tracks via automatic landmarking, principal components analysis and clustering , 2011 .

[31]  R. W. Baird,et al.  Diving behaviour of Cuvier's (Ziphius cavirostris) and Blainville's (Mesoplodon densirostris) beaked whales in Hawai'i , 2006 .

[32]  R. Langrock,et al.  Hidden Markov models with arbitrary state dwell-time distributions , 2011, Comput. Stat. Data Anal..

[33]  W. Zucchini,et al.  Hidden Markov Models for Time Series: An Introduction Using R , 2009 .