Network thermodynamic curation of human and yeast genome-scale metabolic models.
暂无分享,去创建一个
[1] Joshua J. Hamilton,et al. Quantitative assessment of thermodynamic constraints on the solution space of genome-scale metabolic models. , 2013, Biophysical journal.
[2] Ronan M. T. Fleming,et al. Consistent Estimation of Gibbs Energy Using Component Contributions , 2013, PLoS Comput. Biol..
[3] Ronan M. T. Fleming,et al. A community-driven global reconstruction of human metabolism , 2013, Nature Biotechnology.
[4] Christoph Steinbeck,et al. The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013 , 2012, Nucleic Acids Res..
[5] David S. Wishart,et al. HMDB 3.0—The Human Metabolome Database in 2013 , 2012, Nucleic Acids Res..
[6] Kathleen A. Curran,et al. Expanding the chemical palate of cells by combining systems biology and metabolic engineering. , 2012, Metabolic engineering.
[7] Pedro Mendes,et al. Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network , 2012, BMC Systems Biology.
[8] Ronan M. T. Fleming,et al. Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction. , 2012, Biophysical journal.
[9] G. Muzio,et al. Aldehyde dehydrogenases and cell proliferation. , 2012, Free radical biology & medicine.
[10] Stefan J. Jol,et al. Thermodynamic calculations for biochemical transport and reaction processes in metabolic networks. , 2010, Biophysical journal.
[11] L. Quek,et al. AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis1[W] , 2009, Plant Physiology.
[12] Ronan M. T. Fleming,et al. Quantitative assignment of reaction directionality in constraint-based models of metabolism: application to Escherichia coli. , 2009, Biophysical chemistry.
[13] Susumu Goto,et al. KEGG for representation and analysis of molecular networks involving diseases and drugs , 2009, Nucleic Acids Res..
[14] Urs von Stockar,et al. Influence of uncertainties in pH, pMg, activity coefficients, metabolite concentrations, and other factors on the analysis of the thermodynamic feasibility of metabolic pathways , 2009, Biotechnology and bioengineering.
[15] Lixue Dong,et al. The Redox Environment in the Mitochondrial Intermembrane Space Is Maintained Separately from the Cytosol and Matrix* , 2008, Journal of Biological Chemistry.
[16] Markus J. Herrgård,et al. A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology , 2008, Nature Biotechnology.
[17] Matthew D. Jankowski,et al. Group contribution method for thermodynamic analysis of complex metabolic networks. , 2008, Biophysical journal.
[18] Adam M. Feist,et al. The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli , 2008, Nature Biotechnology.
[19] Nicola Zamboni,et al. anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data , 2008, BMC Bioinformatics.
[20] Mike Tyers,et al. The size of the nucleus increases as yeast cells grow. , 2007, Molecular biology of the cell.
[21] L. Gladden. Is there an intracellular lactate shuttle in skeletal muscle? , 2007, The Journal of physiology.
[22] V. Vasiliou,et al. Neurotoxicity and Metabolism of the Catecholamine-Derived 3,4-Dihydroxyphenylacetaldehyde and 3,4-Dihydroxyphenylglycolaldehyde: The Role of Aldehyde Dehydrogenase , 2007, Pharmacological Reviews.
[23] V. Hatzimanikatis,et al. Thermodynamics-based metabolic flux analysis. , 2007, Biophysical journal.
[24] Xiaodong Wang,et al. Diazonamide toxins reveal an unexpected function for ornithine δ-amino transferase in mitotic cell division , 2007, Proceedings of the National Academy of Sciences.
[25] Monica L. Mo,et al. Global reconstruction of the human metabolic network based on genomic and bibliomic data , 2007, Proceedings of the National Academy of Sciences.
[26] S. Panke,et al. Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data , 2006, Molecular systems biology.
[27] J. Winther,et al. Measuring intracellular redox conditions using GFP-based sensors. , 2006, Antioxidants & redox signaling.
[28] R. Alberty. Biochemical thermodynamics: applications of Mathematica. , 2006, Methods of biochemical analysis.
[29] Matthew D. Jankowski,et al. Genome-scale thermodynamic analysis of Escherichia coli metabolism. , 2006, Biophysical journal.
[30] U. von Stockar,et al. How reliable are thermodynamic feasibility statements of biochemical pathways? , 2005, Biotechnology and bioengineering.
[31] E. Luk,et al. Manganese Activation of Superoxide Dismutase 2 in the Mitochondria of Saccharomyces cerevisiae* , 2005, Journal of Biological Chemistry.
[32] P. Pinton,et al. pH difference across the outer mitochondrial membrane measured with a green fluorescent protein mutant. , 2005, Biochemical and biophysical research communications.
[33] Devin Oglesbee,et al. Investigating Mitochondrial Redox Potential with Redox-sensitive Green Fluorescent Protein Indicators* , 2004, Journal of Biological Chemistry.
[34] B. Palsson,et al. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) , 2003, Genome Biology.
[35] A Miyawaki,et al. Measurement of cytosolic, mitochondrial, and Golgi pH in single living cells with green fluorescent proteins. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[36] Graeme M. Walker,et al. Yeast Physiology and Biotechnology , 1998 .
[37] B. Palsson,et al. Metabolic Flux Balancing: Basic Concepts, Scientific and Practical Use , 1994, Bio/Technology.
[38] Michael L. Mavrovouniotis,et al. Identification of Localized and Distributed Bottlenecks in Metabolic Pathways , 1993, ISMB.
[39] J. Stubbe,et al. Purification and characterization of the purE, purK, and purC gene products: identification of a previously unrecognized energy requirement in the purine biosynthetic pathway. , 1992, Biochemistry.
[40] Marjoriec . Brandrissandborismagasanik,et al. Subcellular compartmentation in control of converging pathways for proline and arginine metabolism in Saccharomyces cerevisiae , 1981, Journal of bacteriology.
[41] W. Dewey,et al. Quantification of mitochondria during the cell cycle of Chinese hamster cells. , 1976, Experimental cell research.
[42] B. Palsson,et al. A protocol for generating a high-quality genome-scale metabolic reconstruction , 2010, Nature Protocols.
[43] Miguel Rocha,et al. Analysis of the Effect of Reversibility Constraints on the Predictions of Genome-Scale Metabolic Models , 2010, IWPACBB.
[44] Lake-Ee Quek,et al. On the reconstruction of the Mus musculus genome-scale metabolic network model. , 2008, Genome informatics. International Conference on Genome Informatics.
[45] R. Alberty. Thermodynamics of Biochemical Reactions , 2003 .
[46] A. Emons,et al. Boekbespreking: Molecular biology of the cell, B. Alberts, D. Bray, J. Lewis, M. Raff, K. Robers, D.J. Watson. Garland Publ., New York. 1989. , 1990 .