Predictive markers for AD in a multi-modality framework: An analysis of MCI progression in the ADNI population

Alzheimer's Disease (AD) and other neurodegenerative diseases affect over 20 million people worldwide, and this number is projected to significantly increase in the coming decades. Proposed imaging-based markers have shown steadily improving levels of sensitivity/specificity in classifying individual subjects as AD or normal. Several of these efforts have utilized statistical machine learning techniques, using brain images as input, as means of deriving such AD-related markers. A common characteristic of this line of research is a focus on either (1) using a single imaging modality for classification, or (2) incorporating several modalities, but reporting separate results for each. One strategy to improve on the success of these methods is to leverage all available imaging modalities together in a single automated learning framework. The rationale is that some subjects may show signs of pathology in one modality but not in another-by combining all available images a clearer view of the progression of disease pathology will emerge. Our method is based on the Multi-Kernel Learning (MKL) framework, which allows the inclusion of an arbitrary number of views of the data in a maximum margin, kernel learning framework. The principal innovation behind MKL is that it learns an optimal combination of kernel (similarity) matrices while simultaneously training a classifier. In classification experiments MKL outperformed an SVM trained on all available features by 3%-4%. We are especially interested in whether such markers are capable of identifying early signs of the disease. To address this question, we have examined whether our multi-modal disease marker (MMDM) can predict conversion from Mild Cognitive Impairment (MCI) to AD. Our experiments reveal that this measure shows significant group differences between MCI subjects who progressed to AD, and those who remained stable for 3 years. These differences were most significant in MMDMs based on imaging data. We also discuss the relationship between our MMDM and an individual's conversion from MCI to AD.

[1]  Sebastian Nowozin,et al.  Let the kernel figure it out; Principled learning of pre-processing for kernel classifiers , 2009, 2009 IEEE Conference on Computer Vision and Pattern Recognition.

[2]  C. Jack,et al.  Brain atrophy rates predict subsequent clinical conversion in normal elderly and amnestic MCI , 2005, Neurology.

[3]  Karl J. Friston,et al.  Voxel-Based Morphometry—The Methods , 2000, NeuroImage.

[4]  Clifford R. Jack,et al.  Alzheimer's disease diagnosis in individual subjects using structural MR images: Validation studies , 2008, NeuroImage.

[5]  Gunnar Rätsch,et al.  Large Scale Multiple Kernel Learning , 2006, J. Mach. Learn. Res..

[6]  M. Mesulam Principles of Behavioral and Cognitive Neurology , 2000 .

[7]  W. Klunk,et al.  Imaging brain amyloid in Alzheimer's disease with Pittsburgh Compound‐B , 2004, Annals of neurology.

[8]  John Ashburner,et al.  A fast diffeomorphic image registration algorithm , 2007, NeuroImage.

[9]  Mayo Clinic,et al.  PRECLINICAL EVIDENCE OF ALZHEIMER’S DISEASE IN PERSONS HOMOZYGOUS FOR THE , 2000 .

[10]  et al.,et al.  Spatial patterns of brain atrophy in MCI patients, identified via high-dimensional pattern classification, predict subsequent cognitive decline , 2008, NeuroImage.

[11]  David Arenberg,et al.  Normal Human Aging: The Baltimore Longitudinal Study on Aging , 1984 .

[12]  S. Resnick,et al.  Longitudinal progression of Alzheimer's-like patterns of atrophy in normal older adults: the SPARE-AD index. , 2009, Brain : a journal of neurology.

[13]  Fillia Makedon,et al.  Hippocampal shape analysis: surface-based representation and classification , 2003, SPIE Medical Imaging.

[14]  Nello Cristianini,et al.  Learning the Kernel Matrix with Semidefinite Programming , 2002, J. Mach. Learn. Res..

[15]  Norbert Schuff,et al.  Optimizing power to track brain degeneration in Alzheimer's disease and mild cognitive impairment with tensor-based morphometry: An ADNI study of 515 subjects , 2009, NeuroImage.

[16]  Vikas Singh,et al.  Learning kernels for variants of normalized cuts: Convex relaxations and applications , 2010, 2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition.

[17]  A. Dale,et al.  Combining MR Imaging, Positron-Emission Tomography, and CSF Biomarkers in the Diagnosis and Prognosis of Alzheimer Disease , 2010, American Journal of Neuroradiology.

[18]  H. Braak,et al.  Neuropathological stageing of Alzheimer-related changes , 2004, Acta Neuropathologica.

[19]  Benjamin J. Shannon,et al.  Functional-Anatomic Correlates of Memory Retrieval That Suggest Nontraditional Processing Roles for Multiple Distinct Regions within Posterior Parietal Cortex , 2004, The Journal of Neuroscience.

[20]  D. Bennett,et al.  MRI-derived entorhinal and hippocampal atrophy in incipient and very mild Alzheimer’s disease☆ ☆ This research was supported by grants P01 AG09466 and P30 AG10161 from the National Institute on Aging, National Institutes of Health. , 2001, Neurobiology of Aging.

[21]  M. Bobinski,et al.  The histological validation of post mortem magnetic resonance imaging-determined hippocampal volume in Alzheimer's disease , 1999, Neuroscience.

[22]  C. Jack,et al.  3D maps from multiple MRI illustrate changing atrophy patterns as subjects progress from mild cognitive impairment to Alzheimer's disease. , 2007, Brain : a journal of neurology.

[23]  H. Matsuda Cerebral blood flow and metabolic abnormalities in Alzheimer’s disease , 2001, Annals of nuclear medicine.

[24]  Juan Manuel Górriz,et al.  Computer-aided diagnosis of Alzheimer's type dementia combining support vector machines and discriminant set of features , 2013, Inf. Sci..

[25]  D. Louis Collins,et al.  MRI-Based Automated Computer Classification of Probable AD Versus Normal Controls , 2008, IEEE Transactions on Medical Imaging.

[26]  Nick C Fox,et al.  Automatic classification of MR scans in Alzheimer's disease. , 2008, Brain : a journal of neurology.

[27]  Clifford R. Jack,et al.  3 D maps frommultiple MRI illustrate changing atrophy patterns as subjects progress from mild cognitive impairment to Alzheimer ’ s disease , 2007 .

[28]  H. Braak,et al.  Neuropathology of Alzheimer’s disease: what is new since A. Alzheimer? , 1999, European Archives of Psychiatry and Clinical Neuroscience.

[29]  K. Ishii,et al.  Comparison of gray matter and metabolic reduction in mild Alzheimer’s disease using FDG-PET and voxel-based morphometric MR studies , 2005, European Journal of Nuclear Medicine and Molecular Imaging.

[30]  X. Wu,et al.  Individual patient diagnosis of AD and FTD via high-dimensional pattern classification of MRI , 2008, NeuroImage.

[31]  Jean-Claude Baron,et al.  Resting-state brain glucose utilization as measured by PET is directly related to regional synaptophysin levels: a study in baboons , 2003, NeuroImage.

[32]  Matthias L. Schroeter,et al.  Neural correlates of Alzheimer's disease and mild cognitive impairment: A systematic and quantitative meta-analysis involving 1351 patients , 2009, NeuroImage.

[33]  S. Thibodeau,et al.  Preclinical evidence of Alzheimer's disease in persons homozygous for the epsilon 4 allele for apolipoprotein E. , 1996, The New England journal of medicine.

[34]  Moo K. Chung,et al.  Spatially augmented LPboosting for AD classification with evaluations on the ADNI dataset , 2009, NeuroImage.

[35]  J. Pariente,et al.  Early diagnosis of Alzheimer's disease using cortical thickness: impact of cognitive reserve , 2009, Brain : a journal of neurology.

[36]  J. Mazziotta,et al.  Cerebral metabolic and cognitive decline in persons at genetic risk for Alzheimer's disease. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[37]  S. Resnick,et al.  Detection of prodromal Alzheimer's disease via pattern classification of magnetic resonance imaging , 2008, Neurobiology of Aging.

[38]  J. Baron,et al.  Relationships between Hippocampal Atrophy, White Matter Disruption, and Gray Matter Hypometabolism in Alzheimer's Disease , 2008, The Journal of Neuroscience.

[39]  Gereon R Fink,et al.  Differential remoteness and emotional tone modulate the neural correlates of autobiographical memory. , 2003, Brain : a journal of neurology.

[40]  Gökhan BakIr,et al.  Predicting Structured Data , 2008 .

[41]  Xiaoying Wu,et al.  Structural and functional biomarkers of prodromal Alzheimer's disease: A high-dimensional pattern classification study , 2008, NeuroImage.

[42]  Sterling C. Johnson,et al.  The Influence of Alzheimer Disease Family History and Apolipoprotein E ε4 on Mesial Temporal Lobe Activation , 2006, The Journal of Neuroscience.

[43]  C. Jack,et al.  Ways toward an early diagnosis in Alzheimer’s disease: The Alzheimer’s Disease Neuroimaging Initiative (ADNI) , 2005, Alzheimer's & Dementia.

[44]  R. Woods,et al.  Cortical change in Alzheimer's disease detected with a disease-specific population-based brain atlas. , 2001, Cerebral cortex.

[45]  Alexander Zien,et al.  Non-Sparse Regularization and Efficient Training with Multiple Kernels , 2010, ArXiv.

[46]  Vince D. Calhoun,et al.  A projection pursuit algorithm to classify individuals using fMRI data: Application to schizophrenia , 2008, NeuroImage.

[47]  I. Rossman,et al.  Normal Human Aging: The Baltimore Longitudinal Study of Aging , 1986 .

[48]  Marie Chupin,et al.  Automatic classi fi cation of patients with Alzheimer ' s disease from structural MRI : A comparison of ten methods using the ADNI database , 2010 .

[49]  Corinna Cortes,et al.  Support-Vector Networks , 1995, Machine Learning.

[50]  Sterling C. Johnson,et al.  Task-dependent posterior cingulate activation in mild cognitive impairment , 2006, NeuroImage.

[51]  C. Jack,et al.  Boosting power for clinical trials using classifiers based on multiple biomarkers , 2010, Neurobiology of Aging.

[52]  J. Hoffman,et al.  FDG PET imaging in patients with pathologically verified dementia. , 2000, Journal of nuclear medicine : official publication, Society of Nuclear Medicine.

[53]  Michael Weiner,et al.  Tensor-based morphometry as a neuroimaging biomarker for Alzheimer's disease: An MRI study of 676 AD, MCI, and normal subjects , 2008, NeuroImage.

[54]  Sterling C. Johnson,et al.  Microstructural diffusion changes are independent of macrostructural volume loss in moderate to severe Alzheimer's disease. , 2010, Journal of Alzheimer's disease : JAD.

[55]  J. Ashburner,et al.  Progression of structural neuropathology in preclinical Huntington’s disease: a tensor based morphometry study , 2005, Journal of Neurology, Neurosurgery & Psychiatry.

[56]  F. Bermpohl,et al.  Cortical midline structures and the self , 2004, Trends in Cognitive Sciences.

[57]  S. Leurgans,et al.  MRI-derived entorhinal volume is a good predictor of conversion from MCI to AD , 2004, Neurobiology of Aging.

[58]  Alexander J. Smola,et al.  Learning with kernels , 1998 .

[59]  Radford M. Neal Pattern Recognition and Machine Learning , 2007, Technometrics.

[60]  P. Thompson,et al.  Computational anatomical methods as applied to ageing and dementia. , 2007, The British journal of radiology.

[61]  C. Davatzikos Baseline and longitudinal patterns of brain atrophy in MCI patients, and their use in prediction of short-term conversion to AD: Results from ADNI , 2009, Alzheimer's & Dementia.

[62]  Satoshi Minoshima,et al.  Posterior cingulate cortex in Alzheimer's disease , 1994, The Lancet.

[63]  M. Albert,et al.  Preclinical prediction of AD using neuropsychological tests , 2001, Journal of the International Neuropsychological Society.

[64]  Hiroshi Honda,et al.  Automated method for identification of patients with Alzheimer's disease based on three-dimensional MR images. , 2008, Academic radiology.

[65]  Vikas Singh,et al.  MKL for Robust Multi-modality AD Classification , 2009, MICCAI.

[66]  Christian Gaser,et al.  Identifying patients with obsessive–compulsive disorder using whole-brain anatomy , 2007, NeuroImage.

[67]  Sterling C. Johnson,et al.  A Journal of Neurology , 2005 .