Slow Axonal Transport and Presynaptic Targeting of Clathrin Packets

Clathrin has established roles in endocytosis, with clathrin-cages enclosing membrane infoldings, followed by rapid disassembly and reuse of clathrin-monomers. In neurons, clathrin synthesized in cell-bodies is conveyed via slow axonal transport – enriching at presynapses – however, mechanisms underlying transport/targeting are unknown, and its role at synapses is debated. Combining live-imaging, mass-spectrometry (MS), Apex-labeled EM-tomography and super-resolution, we found that unlike dendrites where clathrin assembles and disassembles as expected, axons contain stable ‘clathrin transport-packets’ that move intermittently with an anterograde bias, conveying endocytosis-related proteins. The overall kinetics generate a slow biased flow of axonal clathrin, and we identify actin/myosin-VI as putative tethers. Inhibiting endocytosis does not affect clathrin transport-packets, suggesting specialized roles in trafficking and synaptic delivery. Presynapses have integer-numbers of clathrin assemblies resembling packets, circumferentially abutting the synaptic-vesicle cluster – an alignment that may have functional implications. The data offer a new nanoscale view of neuronal clathrin, and a mechanistic basis for its slow transport and presynaptic targeting.

[1]  Christophe Leterrier,et al.  About samples, giving examples: Optimized Single Molecule Localization Microscopy. , 2020, Methods.

[2]  Shigeki Watanabe,et al.  The Synaptic Vesicle Cycle Revisited: New Insights into the Modes and Mechanisms , 2019, The Journal of Neuroscience.

[3]  P. Jung,et al.  Processive flow by biased polymerization mediates the slow axonal transport of actin , 2018, The Journal of cell biology.

[4]  E. Kavalali,et al.  Optical detection of three modes of endocytosis at hippocampal synapses , 2018, eLife.

[5]  R. Jahn,et al.  Clathrin coat controls synaptic vesicle acidification by blocking vacuolar ATPase activity , 2018, eLife.

[6]  E. Kavalali,et al.  Author response: Optical detection of three modes of endocytosis at hippocampal synapses , 2018 .

[7]  R. Jahn,et al.  Author response: Clathrin coat controls synaptic vesicle acidification by blocking vacuolar ATPase activity , 2018 .

[8]  G. I. Menon,et al.  Cargo crowding at actin‐rich regions along axons causes local traffic jams , 2018, Traffic.

[9]  Ira Milosevic Revisiting the Role of Clathrin-Mediated Endoytosis in Synaptic Vesicle Recycling , 2018, Front. Cell. Neurosci..

[10]  Conrad C. Huang,et al.  UCSF ChimeraX: Meeting modern challenges in visualization and analysis , 2018, Protein science : a publication of the Protein Society.

[11]  Christophe Leterrier,et al.  The nano-architecture of the axonal cytoskeleton , 2017, Nature Reviews Neuroscience.

[12]  J. Yates,et al.  Hsc70 chaperone activity is required for the cytosolic slow axonal transport of synapsin , 2017, The Journal of cell biology.

[13]  V. Haucke,et al.  Synaptic Vesicle Endocytosis Occurs on Multiple Timescales and Is Mediated by Formin-Dependent Actin Assembly , 2017, Neuron.

[14]  Xiaohua Wan,et al.  3D reconstruction of biological structures: automated procedures for alignment and reconstruction of multiple tilt series in electron tomography , 2016, Advanced Structural and Chemical Imaging.

[15]  R. Steiner,et al.  The Dynamic Localization of Cytoplasmic Dynein in Neurons Is Driven by Kinesin-1 , 2016, Neuron.

[16]  M. Black Axonal transport: The orderly motion of axonal structures. , 2016, Methods in cell biology.

[17]  John D. Venable,et al.  ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity. , 2015, Journal of proteomics.

[18]  Christophe Leterrier,et al.  A dynamic formin-dependent deep F-actin network in axons , 2015, The Journal of cell biology.

[19]  L. Lagnado,et al.  Synaptic vesicles are “primed” for fast clathrin-mediated endocytosis at the ribbon synapse , 2014, Front. Mol. Neurosci..

[20]  E. Holzbaur,et al.  Axonal Transport: Cargo-Specific Mechanisms of Motility and Regulation , 2014, Neuron.

[21]  P. McLean,et al.  α-Synuclein Multimers Cluster Synaptic Vesicles and Attenuate Recycling , 2014, Current Biology.

[22]  Johannes B. Woehrstein,et al.  Multiplexed 3D Cellular Super-Resolution Imaging with DNA-PAINT and Exchange-PAINT , 2014, Nature Methods.

[23]  Subhojit Roy,et al.  Seeing the Unseen , 2014, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.

[24]  Subhojit Roy,et al.  Using photoactivatable GFP to track axonal transport kinetics. , 2014, Methods in molecular biology.

[25]  Christian Rosenmund,et al.  Ultrafast endocytosis at mouse hippocampal synapses , 2013, Nature.

[26]  J. Bonifacino,et al.  Cargo recognition in clathrin-mediated endocytosis. , 2013, Cold Spring Harbor perspectives in biology.

[27]  Dennis C Winkler,et al.  Clathrin-coated vesicles from brain have small payloads: a cryo-electron tomographic study. , 2013, Journal of structural biology.

[28]  U. Das,et al.  Fast Vesicle Transport Is Required for the Slow Axonal Transport of Synapsin , 2013, The Journal of Neuroscience.

[29]  E. Koo,et al.  Activity-Induced Convergence of APP and BACE-1 in Acidic Microdomains via an Endocytosis-Dependent Pathway , 2013, Neuron.

[30]  Mark H. Ellisman,et al.  Engineered ascorbate peroxidase as a genetically-encoded reporter for electron microscopy , 2012, Nature Biotechnology.

[31]  U. Das,et al.  The slow axonal transport of alpha‐synuclein—mechanistic commonalities amongst diverse cytosolic cargoes , 2012, Cytoskeleton.

[32]  Ge Yang,et al.  A simple photoactivation and image analysis module for visualizing and analyzing axonal transport with high temporal resolution , 2011, Nature Protocols.

[33]  Harvey T. McMahon,et al.  Molecular mechanism and physiological functions of clathrin-mediated endocytosis , 2011, Nature Reviews Molecular Cell Biology.

[34]  U. Das,et al.  Mechanistic Logic Underlying the Axonal Transport of Cytosolic Proteins , 2011, Neuron.

[35]  Tianyi Mao,et al.  A Role for Myosin VI in the Localization of Axonal Proteins , 2011, PLoS biology.

[36]  L. Lagnado,et al.  Clathrin‐Mediated Endocytosis at the Synaptic Terminal: Bridging the Gap Between Physiology and Molecules , 2010, Traffic.

[37]  John R Yates,et al.  Proteomics by mass spectrometry: approaches, advances, and applications. , 2009, Annual review of biomedical engineering.

[38]  Yanqiu Zhao,et al.  Gyrating Clathrin: Highly Dynamic Clathrin Structures Involved in Rapid Receptor Recycling , 2008, Traffic.

[39]  J. Yates,et al.  Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice , 2008, Proceedings of the National Academy of Sciences.

[40]  V. Haucke,et al.  Clathrin‐Mediated Endocytosis at Synapses , 2007, Traffic.

[41]  J. Bonifacino,et al.  Ultrastructure of Long‐Range Transport Carriers Moving from the trans Golgi Network to Peripheral Endosomes , 2006, Traffic.

[42]  T. Kirchhausen,et al.  Dynasore, a cell-permeable inhibitor of dynamin. , 2006, Developmental cell.

[43]  M. Kaksonen,et al.  Harnessing actin dynamics for clathrin-mediated endocytosis , 2006, Nature Reviews Molecular Cell Biology.

[44]  Mark H Ellisman,et al.  Transform-based backprojection for volume reconstruction of large format electron microscope tilt series. , 2006, Journal of structural biology.

[45]  Kevin Staras,et al.  Constitutive sharing of recycling synaptic vesicles between presynaptic boutons , 2006, Nature Neuroscience.

[46]  David N Mastronarde,et al.  Automated electron microscope tomography using robust prediction of specimen movements. , 2005, Journal of structural biology.

[47]  S. Harrison,et al.  Molecular model for a complete clathrin lattice from electron cryomicroscopy , 2004, Nature.

[48]  John D. Venable,et al.  MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. , 2004, Rapid communications in mass spectrometry : RCM.

[49]  Steven P Gygi,et al.  Semiquantitative Proteomic Analysis of Rat Forebrain Postsynaptic Density Fractions by Mass Spectrometry* , 2004, Journal of Biological Chemistry.

[50]  Simon C Watkins,et al.  Endocytic Adaptor Molecules Reveal an Endosomal Population of Clathrin by Total Internal Reflection Fluorescence Microscopy*[boxs] , 2004, Journal of Biological Chemistry.

[51]  S. Lemeer,et al.  The AP-2 Complex Is Excluded from the Dynamic Population of Plasma Membrane-associated Clathrin* , 2003, Journal of Biological Chemistry.

[52]  S. Simon,et al.  Movement of Plasma‐Membrane‐Associated Clathrin Spots Along the Microtubule Cytoskeleton , 2003, Traffic.

[53]  J. Bonifacino,et al.  Morphology and dynamics of clathrin/GGA1-coated carriers budding from the trans-Golgi network. , 2003, Molecular biology of the cell.

[54]  S. Simon,et al.  Real-time analysis of clathrin-mediated endocytosis during cell migration , 2003, Journal of Cell Science.

[55]  M. Ehlers,et al.  Dynamics and Regulation of Clathrin Coats at Specialized Endocytic Zones of Dendrites and Spines , 2002, Neuron.

[56]  J. Yates,et al.  DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. , 2002, Journal of proteome research.

[57]  Å. Engqvist-Goldstein,et al.  Clathrin Hub Expression Dissociates the Actin‐Binding Protein Hip1R from Coated Pits and Disrupts Their Alignment with the Actin Cytoskeleton , 2001, Traffic.

[58]  J. Yates,et al.  Large-scale analysis of the yeast proteome by multidimensional protein identification technology , 2001, Nature Biotechnology.

[59]  Scott T. Brady,et al.  Neurofilaments Are Transported Rapidly But Intermittently in Axons: Implications for Slow Axonal Transport , 2000, The Journal of Neuroscience.

[60]  Lei Wang,et al.  Rapid movement of axonal neurofilaments interrupted by prolonged pauses , 2000, Nature Cell Biology.

[61]  Francesca Santini,et al.  Spatial control of coated-pit dynamics in living cells , 1999, Nature Cell Biology.

[62]  J R Kremer,et al.  Computer visualization of three-dimensional image data using IMOD. , 1996, Journal of structural biology.

[63]  G. Bloom,et al.  Fast axonal transport of kinesin in the rat visual system: functionality of kinesin heavy chain isoforms. , 1995, Molecular biology of the cell.

[64]  J. Keen,et al.  Stable clathrin: uncoating protein (hsc70) complexes in intact neurons and their axonal transport , 1991, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[65]  S. Brady,et al.  Axonal transport of a clathrin uncoating atpase (HSC70): A role for hsc70 in the modulation of coated vesicle assembly in vivo , 1989, Journal of neuroscience research.

[66]  M. Tytell,et al.  Axonal transport of clathrin-associated proteins , 1987, Brain Research.

[67]  R. Lasek,et al.  Axonal transport of the cytoplasmic matrix , 1984, The Journal of cell biology.

[68]  J. W. Woods,et al.  Tubulin as a molecular component of coated vesicles , 1983, Journal of Cell Biology.

[69]  R. Kelly,et al.  Identification of three coated vesicle components as alpha- and beta- tubulin linked to a phosphorylated 50,000-dalton polypeptide , 1983, The Journal of cell biology.

[70]  R. Lasek,et al.  Cohesive axonal transport of the slow component b complex of polypeptides , 1982, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[71]  R. Lasek,et al.  Axonal transport: each major rate component reflects the movement of distinct macromolecular complexes. , 1981, Science.

[72]  R. Lasek,et al.  Clathrin is axonally transported as part of slow component b: the microfilament complex , 1981, The Journal of cell biology.

[73]  B. Grafstein,et al.  Intracellular transport in neurons. , 1980, Physiological reviews.

[74]  T. Reese,et al.  EVIDENCE FOR RECYCLING OF SYNAPTIC VESICLE MEMBRANE DURING TRANSMITTER RELEASE AT THE FROG NEUROMUSCULAR JUNCTION , 1973, The Journal of cell biology.