Development of microbial-enzyme-mediated decomposition model parameters through steady-state and dynamic analyses.

We developed a microbial-enzyme-mediated decomposition (MEND) model, based on the Michaelis-Menten kinetics, that describes the dynamics of physically defined pools of soil organic matter (SOC). These include particulate, mineral-associated, dissolved organic matter (POC, MOC, and DOC, respectively), microbial biomass, and associated exoenzymes. The ranges and/or distributions of parameters were determined by both analytical steady-state and dynamic analyses with SOC data from the literature. We used an improved multi-objective parameter sensitivity analysis (MOPSA) to identify the most important parameters for the full model: maintenance of microbial biomass, turnover and synthesis of enzymes, and carbon use efficiency (CUE). The model predicted that an increase of 2 degrees C (baseline temperature 12 degrees C) caused the pools of POC-cellulose, MOC, and total SOC to increase with dynamic CUE and decrease with constant CUE, as indicated by the 50% confidence intervals. Regardless of dynamic or constant CUE, the changes in pool size of POC, MOC, and total SOC varied from -8% to 8% under +2 degrees C. The scenario analysis using a single parameter set indicates that higher temperature with dynamic CUE might result in greater net increases in both POC-cellulose and MOC pools. Different dynamics of various SOC pools reflected the catalytic functions of specific enzymes targeting specific substrates and the interactions between microbes, enzymes, and SOC. With the feasible parameter values estimated in this study, models incorporating fundamental principles of microbial-enzyme dynamics can lead to simulation results qualitatively different from traditional models with fast/slow/passive pools.

[1]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[2]  W. Post,et al.  A theoretical reassessment of microbial maintenance and implications for microbial ecology modeling. , 2012, FEMS microbiology ecology.

[3]  Julio R. Banga,et al.  Novel global sensitivity analysis methodology accounting for the crucial role of the distribution of input parameters: application to systems biology models , 2012 .

[4]  W. Post,et al.  Parameter estimation for models of ligninolytic and cellulolytic enzyme kinetics , 2012 .

[5]  Craig C. Brandt,et al.  Relation between Soil Order and Sorption of Dissolved Organic Carbon in Temperate Subsoils , 2012 .

[6]  Jizhong Zhou,et al.  Microbial mediation of carbon-cycle feedbacks to climate warming , 2012 .

[7]  Shu-lin Chen,et al.  Estimating greenhouse gas emissions from soil following liquid manure applications using a unit response curve method , 2012 .

[8]  Shu-lin Chen,et al.  A review on parameterization and uncertainty in modeling greenhouse gas emissions from soil , 2012 .

[9]  Eoin L. Brodie,et al.  Integrating microbial ecology into ecosystem models: challenges and priorities , 2012, Biogeochemistry.

[10]  M. G. Ryan,et al.  Temperature and soil organic matter decomposition rates – synthesis of current knowledge and a way forward , 2011 .

[11]  D. Manning,et al.  Persistence of soil organic matter as an ecosystem property , 2011, Nature.

[12]  J. Xia,et al.  Improvement of SWAT2000 modelling to assess the impact of dams and sluices on streamflow in the Huai River basin of China , 2010 .

[13]  Mark A. Bradford,et al.  Soil-carbon response to warming dependent on microbial physiology , 2010 .

[14]  K. Treseder,et al.  Microbial communities and their relevance for ecosystem models: Decomposition as a case study , 2010 .

[15]  S. Mohammad,et al.  Kinetics and thermodynamics of adsorption of cadusafos on soils. , 2009, Journal of hazardous materials.

[16]  J. Neff,et al.  Does adding microbial mechanisms of decomposition improve soil organic matter models? A comparison of four models using data from a pulsed rewetting experiment , 2009 .

[17]  Jun Xia,et al.  Quantification of effects of climate variations and human activities on runoff by a monthly water balance model: A case study of the Chaobai River basin in northern China , 2009 .

[18]  M. Nashriyah,et al.  Adsorption and desorption of paraquat in two Malaysian agricultural soils. , 2009 .

[19]  T. Moore,et al.  Adsorption of dissolved organic carbon to mineral soils: A comparison of four isotherm approaches , 2008 .

[20]  S. Allison,et al.  Stoichiometry of soil enzyme activity at global scale. , 2008, Ecology letters.

[21]  H. Laudon,et al.  Modeling the dissolved organic carbon output from a boreal mire using the convection‐dispersion equation: Importance of representing sorption , 2008 .

[22]  Søren Hansen,et al.  Challenges in modelling dissolved organic matter dynamics in agricultural soil using DAISY , 2008 .

[23]  Noam Agmon,et al.  Theory and simulation of diffusion-controlled Michaelis-Menten kinetics for a static enzyme in solution. , 2008, The journal of physical chemistry. B.

[24]  P. Sollins,et al.  A conceptual model of organo-mineral interactions in soils: self-assembly of organic molecular fragments into zonal structures on mineral surfaces , 2007 .

[25]  G. Hofman,et al.  Comparison of different isotherm models for dissolved organic carbon (DOC) and nitrogen (DON) sorption to mineral soil , 2007 .

[26]  Charles T. Garten,et al.  Low dissolved organic carbon input from fresh litter to deep mineral soils , 2007 .

[27]  P. V. van Bodegom,et al.  Microbial Maintenance: A Critical Review on Its Quantification , 2007, Microbial ecology.

[28]  R. Srinivasan,et al.  A global sensitivity analysis tool for the parameters of multi-variable catchment models , 2006 .

[29]  D. Moorhead,et al.  A THEORETICAL MODEL OF LITTER DECAY AND MICROBIAL INTERACTION , 2006 .

[30]  E. Davidson,et al.  Temperature sensitivity of soil carbon decomposition and feedbacks to climate change , 2006, Nature.

[31]  E. Davidson,et al.  On the variability of respiration in terrestrial ecosystems: moving beyond Q10 , 2006 .

[32]  P. Jardine,et al.  Vadose Zone Flow and Transport of Dissolved Organic Carbon at Multiple Scales in Humid Regimes , 2006 .

[33]  W. Gams Soil enzymes , 1973, Netherlands Journal of Plant Pathology.

[34]  S. Sohn,et al.  Modification of Langmuir isotherm in solution systems--definition and utilization of concentration dependent factor. , 2005, Chemosphere.

[35]  R. McMurtrie,et al.  Soil particulate organic matter effects on nitrogen availability after afforestation with Eucalyptus globulus , 2004 .

[36]  S. Bridgham,et al.  Adsorption of Dissolved Organic Carbon and Nitrogen in Soils of a Weathering Chronosequence , 2004 .

[37]  B. Michalzik,et al.  Modelling the production and transport of dissolved organic carbon in forest soils , 2003 .

[38]  L. Seymour,et al.  TEMPERATURE EFFECTS ON PHOTOSYNTHESIS, GROWTH RESPIRATION, AND MAINTENANCE RESPIRATION OF MARIGOLD , 2003 .

[39]  M. Chantigny Dissolved and water-extractable organic matter in soils: a review on the influence of land use and management practices , 2003 .

[40]  Craig M. Bethke,et al.  A New Rate Law Describing Microbial Respiration , 2003, Applied and Environmental Microbiology.

[41]  Joshua P. Schimel,et al.  The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model , 2003 .

[42]  Nikos A. Vlassis,et al.  The global k-means clustering algorithm , 2003, Pattern Recognit..

[43]  K. Paustian,et al.  Sources and composition of soil organic matter fractions between and within soil aggregates , 2001 .

[44]  William H. Schlesinger,et al.  Limited carbon storage in soil and litter of experimental forest plots under increased atmospheric CO2 , 2001, Nature.

[45]  G. Asner,et al.  Dissolved Organic Carbon in Terrestrial Ecosystems: Synthesis and a Model , 2001, Ecosystems.

[46]  M. Kaupenjohann,et al.  Sorption of dissolved organic carbon in soils: effects of soil sample storage, soil-to-solution ratio, and temperature , 2001 .

[47]  Christoph Hinz,et al.  Description of sorption data with isotherm equations , 2001 .

[48]  Ji‐Hyung Park,et al.  Fluxes and concentrations of dissolved organic carbon and nitrogen – a synthesis for temperate forests , 2001 .

[49]  R. Mrabet,et al.  Total, particulate organic matter and structural stability of a Calcixeroll soil under different wheat rotations and tillage systems in a semiarid area of Morocco , 2001 .

[50]  L. Seymour,et al.  Growth Respiration, Maintenance Respiration, and Carbon Fixation of Vinca: A Time Series Analysis , 2000 .

[51]  R. Qualls,et al.  Comparison of the behavior of soluble organic and inorganic nutrients in forest soils , 2000 .

[52]  W. Horwath,et al.  Decomposition of rice straw and microbial carbon use efficiency under different soil temperatures and moistures , 2000 .

[53]  Tomasz Panczyk,et al.  Kinetics of Isothermal Adsorption on Energetically Heterogeneous Solid Surfaces: A New Theoretical Description Based on the Statistical Rate Theory of Interfacial Transport , 2000 .

[54]  Y. Kuzyakov,et al.  Carbon input by plants into the soil. Review. , 2000 .

[55]  G. Guggenberger,et al.  The role of DOM sorption to mineral surfaces in the preservation of organic matter in soils. , 2000 .

[56]  Ji‐Hyung Park,et al.  Controls on the dynamics of dissolved organic matter in soils: a review. , 2000 .

[57]  D. Angers,et al.  Particulate and mineral-associated organic matter in water-stable aggregates as affected by mineral fertilizer and manure applications , 1999 .

[58]  J. Harvey,et al.  Modeling CO2 degassing and pH in a stream-aquifer system , 1998 .

[59]  Julie D. Jastrow,et al.  Soil aggregate formation and the accrual of particulate and mineral-associated organic matter , 1996 .

[60]  J. Novak,et al.  Carbon-13 Nuclear Magnetic Resonance Spectra of Soil Water-Soluble Organic Carbon , 1992 .

[61]  W. Schlesinger,et al.  The global carbon dioxide flux in soil respiration and its relationship to vegetation and climate , 1992 .

[62]  W. Verstraete,et al.  Estimation of active soil microbial biomass by mathematical analysis of respiration curves: Calibration of the test procedure , 1987 .

[63]  Wilfred M. Post,et al.  Soil carbon pools and world life zones , 1982, Nature.

[64]  H. William Hunt,et al.  A Simulation Model for Decomposition in Grasslands , 1977 .

[65]  R. Lyman Ott.,et al.  An introduction to statistical methods and data analysis , 1977 .

[66]  S. Pirt The maintenance energy of bacteria in growing cultures , 1965, Proceedings of the Royal Society of London. Series B. Biological Sciences.