Multiple-replica exchange with information retrieval.
暂无分享,去创建一个
[1] D. Kofke. Comment on "The incomplete beta function law for parallel tempering sampling of classical canonical systems" [J. Chem. Phys. 120, 4119 (2004)]. , 2004, The Journal of chemical physics.
[2] D. Landau,et al. Efficient, multiple-range random walk algorithm to calculate the density of states. , 2000, Physical review letters.
[3] D. Frenkel. Waste-Recycling Monte Carlo , 2006 .
[4] Y. Sugita,et al. Multidimensional replica-exchange method for free-energy calculations , 2000, cond-mat/0009120.
[5] Ulrich H E Hansmann,et al. Generalized ensemble and tempering simulations: a unified view. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.
[6] D. Frenkel. Speed-up of Monte Carlo simulations by sampling of rejected states. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[7] M. Athènes,et al. Web ensemble averages for retrieving relevant information from rejected Monte Carlo moves , 2007 .
[8] M. Athènes. Computation of a chemical potential using a residence weight algorithm. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[9] J. D. de Pablo,et al. Optimal allocation of replicas in parallel tempering simulations. , 2005, The Journal of chemical physics.
[10] F. Calvo,et al. Sampling along reaction coordinates with the Wang-Landau method , 2002, cond-mat/0205428.
[11] F. Calvo,et al. All-exchanges parallel tempering. , 2005, The Journal of chemical physics.
[12] Berend Smit,et al. Novel scheme to study structural and thermal properties of continuously deformable molecules , 1992 .
[13] Christopher R Sweet,et al. Accelerating the replica exchange method through an efficient all-pairs exchange. , 2007, The Journal of chemical physics.
[14] K. Hukushima,et al. Exchange Monte Carlo Method and Application to Spin Glass Simulations , 1995, cond-mat/9512035.
[15] Daan Frenkel,et al. Monte Carlo Sampling of a Markov Web. , 2005, Journal of chemical theory and computation.
[16] A. Lyubartsev,et al. New approach to Monte Carlo calculation of the free energy: Method of expanded ensembles , 1992 .
[17] K. Sanbonmatsu,et al. Structure of Met‐enkephalin in explicit aqueous solution using replica exchange molecular dynamics , 2002, Proteins.
[18] Esselink,et al. Parallel Monte Carlo simulations. , 1995, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[19] D. Ceperley,et al. Monte Carlo simulation of a many-fermion study , 1977 .
[20] M. Athènes. A path-sampling scheme for computing thermodynamic properties of a many-body system in a generalized ensemble , 2004 .
[21] D. Kofke,et al. Selection of temperature intervals for parallel-tempering simulations. , 2005, The Journal of chemical physics.
[22] M. Troyer,et al. Optimized parallel tempering simulations of proteins. , 2006, The Journal of chemical physics.
[23] Daan Frenkel,et al. Virtual-move parallel tempering. , 2005, Chemphyschem : a European journal of chemical physics and physical chemistry.
[24] M Athènes. Parallel Monte Carlo simulations using a residence weight algorithm. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[25] C. Predescu,et al. On the efficiency of exchange in parallel tempering monte carlo simulations. , 2004, The journal of physical chemistry. B.
[26] D. L. Freeman,et al. Phase changes in 38-atom Lennard-Jones clusters. I. A parallel tempering study in the canonical ensemble , 2000, physics/0003068.
[27] David A. Kofke,et al. ARTICLES On the acceptance probability of replica-exchange Monte Carlo trials , 2002 .
[28] Berend Smit,et al. Accelerating Monte Carlo Sampling , 2002 .
[29] Wang,et al. Replica Monte Carlo simulation of spin glasses. , 1986, Physical review letters.