Reconstruct gene regulatory network using slice pattern model
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Guohua Wang | Youping Deng | Jack Y. Yang | Yunlong Liu | Yadong Wang | Yadong Wang | Youping Deng | Yunlong Liu | Guohua Wang | Jack Y Yang | Bo Yang | Haijun Tao | Bo Yang | Haijun Tao
[1] Robert Tibshirani,et al. Boolean implication networks derived from large scale, whole genome microarray datasets , 2008, Genome Biology.
[2] L. Johnston,et al. Overlapping and distinct roles of the duplicated yeast transcription factors Ace2p and Swi5p , 2001, Molecular microbiology.
[3] L. Johnston,et al. The forkhead protein Fkh2 is a component of the yeast cell cycle transcription factor SFF , 2000, The EMBO journal.
[4] J. Barker,et al. Large-scale temporal gene expression mapping of central nervous system development. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[5] T. Mestl,et al. A mathematical framework for describing and analysing gene regulatory networks. , 1995, Journal of theoretical biology.
[6] Lukas Endler,et al. Forkhead-like transcription factors recruit Ndd1 to the chromatin of G2/M-specific promoters , 2000, Nature.
[7] Michael Q. Zhang,et al. Identifying combinatorial regulation of transcription factors and binding motifs , 2004, Genome Biology.
[8] Aurélien Mazurie,et al. Gene networks inference using dynamic Bayesian networks , 2003, ECCB.
[9] J. Vohradský. Neural Model of the Genetic Network* , 2001, The Journal of Biological Chemistry.
[10] Hitoshi Iba,et al. Inference of gene regulatory model by genetic algorithms , 2001, Proceedings of the 2001 Congress on Evolutionary Computation (IEEE Cat. No.01TH8546).
[11] Tommi S. Jaakkola,et al. Using Graphical Models and Genomic Expression Data to Statistically Validate Models of Genetic Regulatory Networks , 2000, Pacific Symposium on Biocomputing.
[12] Nicola J. Rinaldi,et al. Serial Regulation of Transcriptional Regulators in the Yeast Cell Cycle , 2001, Cell.
[13] Marcel J. T. Reinders,et al. Linear Modeling of Genetic Networks from Experimental Data , 2000, ISMB.
[14] Ronald W. Davis,et al. A genome-wide transcriptional analysis of the mitotic cell cycle. , 1998, Molecular cell.
[15] Min Zou,et al. A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data , 2005, Bioinform..
[16] Nicola J. Rinaldi,et al. Transcriptional Regulatory Networks in Saccharomyces cerevisiae , 2002, Science.
[17] Amit Bhaya,et al. Reverse Engineering of Genetic Networks Using Variable Length Genetic Algorithms with a Boolean Network Model , 2002, WOB.
[18] D. Botstein,et al. Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth , 2000, Nature.
[19] Michal Linial,et al. Using Bayesian Networks to Analyze Expression Data , 2000, J. Comput. Biol..
[20] John Quackenbush,et al. Seeded Bayesian Networks: Constructing genetic networks from microarray data , 2008, BMC Systems Biology.
[21] D. Botstein,et al. Exploring the new world of the genome with DNA microarrays , 1999, Nature Genetics.
[22] L. Breeden,et al. Multiple SWI6-dependent cis-acting elements control SWI4 transcription through the cell cycle , 1993, Molecular and cellular biology.
[23] Tianhai Tian,et al. Stochastic neural network models for gene regulatory networks , 2003, The 2003 Congress on Evolutionary Computation, 2003. CEC '03..
[24] A. Nordheim,et al. Mcm1 is required to coordinate G2-specific transcription in Saccharomyces cerevisiae , 1995, Molecular and cellular biology.
[25] L. Breeden,et al. Early Cell Cycle Box-Mediated Transcription ofCLN3 and SWI4 Contributes to the Proper Timing of the G1-to-S Transition in Budding Yeast , 2001, Molecular and Cellular Biology.
[26] Ting Chen,et al. Modeling Gene Expression with Differential Equations , 1998, Pacific Symposium on Biocomputing.
[27] Patrik D'haeseleer,et al. Linear Modeling of mRNA Expression Levels During CNS Development and Injury , 1998, Pacific Symposium on Biocomputing.
[28] Kian-Lee Tan,et al. Identifying time-lagged gene clusters using gene expression data , 2005, Bioinform..
[29] Paul J. Kennedy,et al. Evaluating an Evolutionary Approach for Reconstructing Gene Regulatory Networks , 2004 .
[30] Pedro Larrañaga,et al. Detecting reliable gene interactions by a hierarchy of Bayesian network classifiers , 2008, Comput. Methods Programs Biomed..
[31] A. Shevchenko,et al. Forkhead transcription factors, Fkh1p and Fkh2p, collaborate with Mcm1p to control transcription required for M-phase , 2000, Current Biology.
[32] Jun S. Liu,et al. An algorithm for finding protein–DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments , 2002, Nature Biotechnology.
[33] David Lydall,et al. NDD1, a High-Dosage Suppressor ofcdc28-1N, Is Essential for Expression of a Subset of Late-S-Phase-Specific Genes in Saccharomyces cerevisiae , 1999, Molecular and Cellular Biology.
[34] Satoru Miyano,et al. Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model , 1998, Pacific Symposium on Biocomputing.
[35] A. Arkin,et al. Stochastic mechanisms in gene expression. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[36] S Fuhrman,et al. Reveal, a general reverse engineering algorithm for inference of genetic network architectures. , 1998, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
[37] Eyke Hüllermeier,et al. Clustering of gene expression data using a local shape-based similarity measure , 2005, Bioinform..
[38] Gary D. Stormo,et al. Modeling Regulatory Networks with Weight Matrices , 1998, Pacific Symposium on Biocomputing.