Automatic water detection from multidimensional hierarchical clustering for Sentinel-2 images and a comparison with Level 2A processors

Abstract Continuous monitoring of water surfaces is essential for water resource management. This study presents a nonparametric unsupervised automatic algorithm for the identification of inland water pixels from multispectral satellite data using multidimensional clustering and a high-performance subsampling approach for large scenes. Clustering analysis is a technique that is used to identify similar samples in a multidimensional data space. The spectral information and derived indices were used to characterize each scene pixel individually. A machine learning approach with random subsampling and generalization through a Naive Bayes classifier was also proposed to make the application of complex algorithms to large scenes feasible. Accuracy was evaluated using an independent dataset that provides water bodies in 15 Sentinel-2 images over France acquired in different seasons and that covers a large range of water bodies and water colour types. The validation dataset covers a water surface of more than 1200 km2 (approximately 12 million pixels) including over 80,000 water bodies outlined using a semiautomatic active learning method, which were manually revised. The classification results were compared to the water pixel classification using three of the major Level 2A processors (MAJA, Sen2Cor and FMask) and two of the most common thresholding techniques: Otsu and Canny-edge. An input mask was used to remove coastal waters, clouds, shadows and snow pixels. Water pixels were identified automatically from the clustering process without the need for ancillary or pretrained data. Combinations using up to three water indices (Modified Normalized Difference Water Index-MNDWI, Normalized Difference Water Index-NDWI and Multiband Water Index-MBWI) and two reflectance bands (B8 and B12) were tested in the algorithm, and the best combination was NDWI-B12. Of all the methods, our method achieved the highest mean kappa score, 0.874, across all tested scenes, with a per-scene kappa ranging from 0.608 to 0.980, and the lowest mean standard deviation of 0.091. Standard Otsu's thresholding had the worst performance due to the lack of a bimodal histogram, and the Canny-edge variation achieved an overall kappa of 0.718 when used with the MNDWI. For water masks provided by generic processors, FMask outperformed MAJA and Sen2Cor and obtained an overall kappa of 0.764. In-depth analysis shows a quick drop in performance for all of the methods in identifying water bodies with a surface area below 0.5 ha, but the proposed approach outperformed the second best method by 34% in this size class.