Estimating species tolerance to human perturbation: Expert judgment versus empirical approaches

Abstract Species tolerances are frequently used in multi-metric ecological quality indices, and typically have the strongest responses to disturbances. Usually the tolerances of many species are based on expert judgment, with little support from empirical ecological or physiological data. This is particularly true for fish of Mediterranean-type rivers, in which there are many basin-endemic taxa with little information on basic life history traits. In addition, the apparent tolerance of native Mediterranean freshwater fish species to naturally harsh environments and their short-term resilience may mask responses to man-made pressures. Consequently, we evaluated different statistical techniques and procedures for quantifying Mediterranean lotic fish tolerances and compared expert judgment of species tolerances with empirically determined tolerance values. We used eight alternative approaches to compute fish tolerance values for the Mediterranean basins of SW Europe. Three types of approaches were used: (1) those based on the concept of niche breadth along an environment/pressure gradient (five models); (2) those based on deviations from expected values at disturbed sites as predicted by statistical models describing relationships between species and environmental variables (generalized linear modelling (GLM) and generalized additive modelling (GAM), two models); and (3) one model based on the relatively independent contributions of pressure variables to the data variation explained by statistical models. Tolerance estimates based on the used/available pressure gradient and the average general pressure value had the highest mean correlations with the expert judgment classification (mean r  = 0.4) and with the other approaches (mean r of 0.48 and 0.46, respectively). The high degree of uncertainty in tolerance estimates should be accounted for when applying them in ecological assessments. Results also highlights the need for better designed research to separate effects of natural and disturbance gradients on species occurrences and densities.

[1]  D. Pont,et al.  Conceptual framework and interdisciplinary approach for the sustainable management of gravel-bed rivers: The case of the Drôme River basin (S.E. France) , 2009, Aquatic Sciences.

[2]  F. M. Chutter,et al.  AN EMPIRICAL BIOTIC INDEX OF THE QUALITY OF WATER IN SOUTH AFRICAN STREAMS AND RIVERS , 1972 .

[3]  Thierry Oberdorff,et al.  Macroinvertebrate-based multimetric predictive models for evaluating the human impact on biotic condition of Bolivian streams , 2011 .

[4]  D. Goffaux,et al.  A review of existing fish assemblage indicators and methodologies , 2007 .

[5]  Steven G. Paulsen,et al.  Assessing water quality changes in the lakes of the northeastern United States using sediment diatoms , 1999 .

[6]  R. Hughes,et al.  Development of a Bird Integrity Index: Using Bird Assemblages as Indicators of Riparian Condition , 2002, Environmental management.

[7]  Didier Pont,et al.  A Predictive Index of Biotic Integrity Model for Aquatic-Vertebrate Assemblages of Western U.S. Streams , 2009 .

[8]  T. R. Whittier,et al.  Macroinvertebrate tolerance values and an assemblage tolerance index (ATI) for western USA streams and rivers , 2010, Journal of the North American Benthological Society.

[9]  F. Jiguet,et al.  Distribution of specialist and generalist species along spatial gradients of habitat disturbance and fragmentation , 2008 .

[10]  Robert M. Hughes,et al.  Biological Diversity and Biological Integrity: Current Concerns for Lakes and Streams , 1992 .

[11]  P. McCullagh,et al.  Generalized Linear Models , 1992 .

[12]  Identification and Use of Plant Species as Ecological Indicators of Air Pollution Stress in National Park Units , 1992 .

[13]  Blake E. Feist,et al.  Are We Meeting the Challenges of Landscape-Scale Riverine Research? A Review , 2010 .

[14]  William N. Venables,et al.  Modern Applied Statistics with S-Plus. , 1996 .

[15]  João M. Oliveira,et al.  Spatially based methods to assess the ecological status of riverine fish assemblages in European ecoregions , 2007 .

[16]  Susan K. Jackson,et al.  The biological condition gradient: a descriptive model for interpreting change in aquatic ecosystems. , 2006, Ecological applications : a publication of the Ecological Society of America.

[17]  R. Kolkwitz,et al.  Ökologie der tierischen Saprobien. Beiträge zur Lehre von der biologischen Gewässerbeurteilung , 1909 .

[18]  D. Pont,et al.  Patterns in species richness and endemism of European freshwater fish , 2006 .

[19]  D. Pont,et al.  A probabilistic model characterizing fish assemblages of French rivers: a framework for environmental assessment , 2001 .

[20]  K. Moder,et al.  Spatially based methods to assess the ecological status of European fish assemblage types , 2007 .

[21]  Lester L. Yuan,et al.  Condition of stream ecosystems in the US: an overview of the first national assessment , 2008, Journal of the North American Benthological Society.

[22]  M. Hill,et al.  Data analysis in community and landscape ecology , 1987 .

[23]  Bodis Katalin,et al.  A pan-European River and Catchment Database , 2007 .

[24]  Thomas P. Simon,et al.  Assessing the Sustainability and Biological Integrity of Water Resources Using Fish Communities , 2020 .

[25]  N. Polunin,et al.  Habitat utilization by coral reef fish: implications for specialists vs. generalists in a changing environment. , 2008, The Journal of animal ecology.

[26]  George Wright,et al.  The Delphi technique as a forecasting tool: issues and analysis , 1999 .

[27]  V. Resh,et al.  Streams in Mediterranean Climate Regions: Abiotic Influences and Biotic Responses to Predictable Seasonal Events , 1999 .

[28]  V. Hermoso,et al.  Assessing freshwater fish sensitivity to different sources of perturbation in a Mediterranean basin , 2009 .

[29]  P. McCullagh,et al.  Generalized Linear Models , 1984 .

[30]  D. Goffaux,et al.  Assessing river biotic condition at a continental scale: a European approach using functional metrics and fish assemblages , 2006 .

[31]  R. Tibshirani,et al.  Generalized Additive Models , 1991 .

[32]  R. Hughes,et al.  Historical changes in large river fish assemblages of the Americas , 2005 .

[33]  M. Hill,et al.  PRINCIPAL COMPONENT ANALYSIS OF TAXONOMIC DATA WITH MULTI-STATE DISCRETE CHARACTERS , 1976 .

[34]  Erich Barke,et al.  Hierarchical partitioning , 1996, Proceedings of International Conference on Computer Aided Design.

[35]  Robert M. Hughes,et al.  An Evaluation of Qualitative Indexes of Physical Habitat Applied to Agricultural Streams in Ten U.S. States 1 , 2010 .

[36]  D. Simberloff,et al.  Ecological Specialization and Susceptibility to Disturbance: Conjectures and Refutations , 2002, The American Naturalist.

[37]  D. Pont,et al.  Ecological traits of fish assemblages from Mediterranean Europe and their responses to human disturbance , 2007 .

[38]  L. Casatti,et al.  Effects of Physical Habitat Degradation on the Stream Fish Assemblage Structure in a Pasture Region , 2006, Environmental management.

[39]  Lester L. Yuan Assigning macroinvertebrate tolerance classifications using generalised additive models , 2004 .

[40]  R. Swihart,et al.  Responses of ‘resistant’ vertebrates to habitat loss and fragmentation: the importance of niche breadth and range boundaries , 2003 .

[41]  P. Moyle,et al.  BIOLOGICAL INVASIONS OF FRESH WATER: EMPIRICAL RULES AND ASSEMBLY THEORY , 1996 .

[42]  D. Pont,et al.  Development of a fish-based index for the assessment of river health in Europe: the European Fish Index , 2007 .

[43]  Frank E. Harrell,et al.  Regression Modeling Strategies: With Applications to Linear Models, Logistic Regression, and Survival Analysis , 2001 .

[44]  R. Hughes,et al.  Fish and Amphibian Tolerance Values and an Assemblage Tolerance Index for Streams and Rivers in the Western USA , 2007 .

[45]  Daren M. Carlisle,et al.  Quantifying tolerance indicator values for common stream fish species of the United States , 2007 .

[46]  Evaluating Fish–Habitat Relationships for Refining Regional Indexes of Biotic Integrity: Development of a Tolerance Index of Habitat Degradation for Maryland Stream Fishes , 2004 .

[47]  Robert M. Hughes,et al.  A Structured Approach for Developing Indices of Biotic Integrity: Three Examples from Streams and Rivers in the Western USA , 2007 .

[48]  Jean Thioulouse,et al.  ADE-4: a multivariate analysis and graphical display software , 1997, Stat. Comput..

[49]  R. Hughes,et al.  Evaluation of Fish Species Tolerances to Environmental Stressors in Lakes in the Northeastern United States , 1998 .