The complex logic of stringent response regulation in Caulobacter crescentus: starvation signalling in an oligotrophic environment
暂无分享,去创建一个
[1] E V Koonin,et al. The HD domain defines a new superfamily of metal-dependent phosphohydrolases. , 1998, Trends in biochemical sciences.
[2] L. Shapiro,et al. A comprehensive set of plasmids for vanillate- and xylose-inducible gene expression in Caulobacter crescentus , 2007, Nucleic acids research.
[3] B. D. Davis,et al. Localization of the stringent protein of Escherichia coli on the 50S ribosomal subunit. , 1974, Proceedings of the National Academy of Sciences of the United States of America.
[4] H. Bremer,et al. Control of spoT-dependent ppGpp synthesis and degradation in Escherichia coli. , 1996, Journal of molecular biology.
[5] C. Sasakawa,et al. Identification and characterization of ispA, a Shigella flexneri chromosomal gene essential for normal in vivo cell division and intercellular spreading , 1996 .
[6] J. Gallant,et al. The control of ribonucleic acid synthesis in Escherichia coli. II. Stringent control of energy metabolism. , 1969, The Journal of biological chemistry.
[7] M. Cashel,et al. Cellular localization of the Escherichia coli SpoT protein , 1995, Journal of bacteriology.
[8] Role of RelA of Streptococcus mutans in Global Control of Gene Expression , 2007, Journal of bacteriology.
[9] Suzanne M. Paley,et al. Integrated pathway/genome databases and their role in drug discovery , 1999 .
[10] M. Nomura,et al. spoT-dependent accumulation of guanosine tetraphosphate in response to fatty acid starvation in Escherichia coli. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[11] H. Rubin,et al. Differential regulation of opposing RelMtb activities by the aminoacylation state of a tRNA.ribosome.mRNA.RelMtb complex. , 2000, Biochemistry.
[12] Lucy Shapiro,et al. A DNA methylation ratchet governs progression through a bacterial cell cycle , 2007, Proceedings of the National Academy of Sciences.
[13] D. Jin,et al. Regulation of Cell Growth during Serum Starvation and Bacterial Survival in Macrophages by the Bifunctional Enzyme SpoT in Helicobacter pylori , 2008, Journal of bacteriology.
[14] C. Albrecht,et al. Iron limitation induces SpoT‐dependent accumulation of ppGpp in Escherichia coli , 2005, Molecular microbiology.
[15] Joel T. Smith,et al. The global, ppGpp‐mediated stringent response to amino acid starvation in Escherichia coli , 2008, Molecular microbiology.
[16] J. Holton,et al. A steric block in translation caused by the antibiotic spectinomycin. , 2007, ACS chemical biology.
[17] N. Agabian,et al. Envelope-associated nucleoid from Caulobacter crescentus stalked and swarmer cells , 1977, Journal of bacteriology.
[18] E. Yagil,et al. Guanosine 3',5'-bispyrophosphate (ppGpp) synthesis in cells of Escherichia coli starved for Pi , 1995, Journal of bacteriology.
[19] E. Bouveret,et al. Acyl carrier protein/SpoT interaction, the switch linking SpoT‐dependent stress response to fatty acid metabolism , 2006, Molecular microbiology.
[20] O. Martínez-Costa,et al. The relA/spoT-Homologous Gene inStreptomyces coelicolor Encodes Both Ribosome-Dependent (p)ppGppSynthesizing and -Degrading Activities , 1998, Journal of bacteriology.
[21] J. Gordon,et al. Stringent factor binds to Escherichia coli ribosomes only in the presence of protein L10 , 1976, FEBS letters.
[22] M. Gropp,et al. Regulation of Escherichia coli RelA Requires Oligomerization of the C-Terminal Domain , 2001, Journal of bacteriology.
[23] R. Gourse,et al. DksA and ppGpp directly regulate transcription of the Escherichia coli flagellar cascade , 2009, Molecular microbiology.
[24] Serafim Batzoglou,et al. Genetic and Computational Identification of a Conserved Bacterial Metabolic Module , 2008, PLoS genetics.
[25] G. Parker,et al. Conditions that trigger guanosine tetraphosphate accumulation in Caulobacter crescentus , 1981, Journal of bacteriology.
[26] R. Gourse,et al. Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. , 2001, Journal of molecular biology.
[27] R. Saiki,et al. A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions. , 1988, Nucleic acids research.
[28] G. Mittenhuber. Comparative genomics and evolution of genes encoding bacterial (p)ppGpp synthetases/hydrolases (the Rel, RelA and SpoT proteins). , 2001, Journal of molecular microbiology and biotechnology.
[29] M. Inouye,et al. CspD, a novel DNA replication inhibitor induced during the stationary phase in Escherichia coli , 2001, Molecular microbiology.
[30] R. England,et al. Accumulation of ppGpp in symbiotic and free-living nitrogen-fixing bacteria following amino acid starvation , 1999, Archives of Microbiology.
[31] H. Xiao,et al. Residual guanosine 3',5'-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations. , 1991, The Journal of biological chemistry.
[32] A. Kelley,et al. The Mechanism for Activation of GTP Hydrolysis on the Ribosome , 2010, Science.
[33] G. Stent,et al. A genetic locus for the regulation of ribonucleic acid synthesis. , 1961, Proceedings of the National Academy of Sciences of the United States of America.
[34] M. Hecker,et al. Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis , 2002, Journal of bacteriology.
[35] Tetsuya Hayashi,et al. ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes , 2006, Molecular microbiology.
[36] A. Rechtsteiner,et al. Roles of relSpn in stringent response, global regulation and virulence of serotype 2 Streptococcus pneumoniae D39 , 2009, Molecular microbiology.
[37] Daniel N. Wilson,et al. Dissection of the mechanism for the stringent factor RelA. , 2002, Molecular cell.
[38] David E Larson,et al. The Caulobacter crescentus polar organelle development protein PodJ is differentially localized and is required for polar targeting of the PleC development regulator , 2003, Molecular microbiology.
[39] J. Blanchard,et al. Molecular insights into aminoglycoside action and resistance. , 2005, Chemical reviews.
[40] Ernest Frederick Gale,et al. The Molecular basis of antibiotic action , 1972 .
[41] L. Shapiro,et al. SpoT Regulates DnaA Stability and Initiation of DNA Replication in Carbon-Starved Caulobacter crescentus , 2008, Journal of bacteriology.
[42] H. Rubin,et al. Cloning and characterization of a bifunctional RelA/SpoT homologue from Mycobacterium tuberculosis. , 1999, Gene.
[43] Michael A. Savageau,et al. Escherichia coli Habitats, Cell Types, and Molecular Mechanisms of Gene Control , 1983, The American Naturalist.
[44] Harvey Rubin,et al. The role of RelMtb-mediated adaptation to stationary phase in long-term persistence of Mycobacterium tuberculosis in mice , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[45] K. Ochi,et al. Evidence that Bacillus subtilis sporulation induced by the stringent response is caused by the decrease in GTP or GDP , 1982, Journal of bacteriology.
[46] J. D. Thomas. The role of dissolved organic matter, particularly free amino acids and humic substances, in freshwater ecosystems , 1997 .
[47] M. Chandler,et al. IS elements as constituents of bacterial genomes. , 1999, Research in microbiology.
[48] G. Stewart,et al. Amplification of the Bacillus subtilis maf gene results in arrested septum formation , 1993, Journal of bacteriology.
[49] K. Potrykus,et al. (p)ppGpp: still magical? , 2008, Annual review of microbiology.
[50] Dong-Eun Chang,et al. Guanosine 3′,5′-bispyrophosphate coordinates global gene expression during glucose-lactose diauxie in Escherichia coli , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[51] J. Neuhard,et al. Regulation of nucleoside triphosphate pools in Escherichia coli. , 1967, Journal of molecular biology.
[52] M. Jiang,et al. G-Protein Control of the Ribosome-Associated Stress Response Protein SpoT , 2007, Journal of bacteriology.
[53] M. Watarai,et al. Roles of Brucella abortus SpoT in morphological differentiation and intramacrophagic replication. , 2005, Microbiology.
[54] J. Letesson,et al. The stringent response mediator Rsh is required for Brucella melitensis and Brucella suis virulence, and for expression of the type IV secretion system virB , 2006, Cellular microbiology.
[55] L. H. Schiavone,et al. The flexible N-terminal domain of ribosomal protein L11 from Escherichia coli is necessary for the activation of stringent factor. , 2007, Journal of molecular biology.
[56] D. Lueking,et al. Stringency in the absence of ppGpp accumulation in Rhodobacter sphaeroides , 1987, Journal of bacteriology.
[57] D. Wells,et al. Helicobacter pylori Initiates the Stringent Response upon Nutrient and pH Downshift , 2006, Journal of bacteriology.
[58] G. Schreiber,et al. Overexpression of the relA gene in Escherichia coli. , 1991, The Journal of biological chemistry.
[59] P. Donini,et al. Helicobacter pylori: a Eubacterium Lacking the Stringent Response , 1999, Journal of bacteriology.
[60] K. Amemiya. Conserved sequence elements upstream and downstream from the transcription initiation site of the Caulobacter crescentus rrnA gene cluster. , 1989, Journal of molecular biology.
[61] J. Blatny,et al. New broad-host-range promoter probe vectors based on the plasmid RK2 replicon. , 2001, FEMS microbiology letters.
[62] S. Falkow,et al. The Campylobacter jejuni stringent response controls specific stress survival and virulence‐associated phenotypes , 2005, Molecular microbiology.
[63] J. Friesen,et al. A relaxed mutant with an altered ribosomal protein L11 , 1976, Molecular and General Genetics MGG.
[64] G. Cross. Sedimentation roperties of polyribosomes, ribosomes and ribosomal subunits from Crithidia oncopelti. , 1970, Biochimica et biophysica acta.
[65] E. Eccleston,et al. Variations in ppGpp levels in Rhodopseudomonas spheroides during adaptation to decreased light intensity. , 1973, Biochemical and biophysical research communications.
[66] A. Cozzone,et al. Effects of aminoglycoside antibiotics on the coupling of protein and RNA syntheses in Escherichia coli. , 1983, Biochemical and biophysical research communications.
[67] Y. Sokawa,et al. Relaxation effect of chloramphenicol on the stringent control in Escherichia coli. , 1978, Journal of biochemistry.
[68] R. Gourse,et al. Control of rRNA expression by small molecules is dynamic and nonredundant. , 2003, Molecular cell.
[69] T. Finan,et al. Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes , 1986, Journal of bacteriology.
[70] G. Schreiber,et al. Characterization of the relA1 mutation and a comparison of relA1 with new relA null alleles in Escherichia coli. , 1989, The Journal of biological chemistry.
[71] W. Haseltine,et al. A new relaxed mutant of Escherichia coli with an altered 50S ribosomal subunit. , 1974, Proceedings of the National Academy of Sciences of the United States of America.
[72] B. Ely,et al. Resistance to amino acid inhibition in Caulobacter crescentus , 1982, Molecular and General Genetics MGG.
[73] E. Huitema,et al. Bacterial Birth Scar Proteins Mark Future Flagellum Assembly Site , 2006, Cell.
[74] B. Das,et al. Stringent response in Vibrio cholerae: genetic analysis of spoT gene function and identification of a novel (p)ppGpp synthetase gene , 2009, Molecular microbiology.
[75] John W. Foster,et al. DksA A Critical Component of the Transcription Initiation Machinery that Potentiates the Regulation of rRNA Promoters by ppGpp and the Initiating NTP , 2004, Cell.
[76] R. Gourse,et al. Changes in the Concentrations of Guanosine 5′-Diphosphate 3′-Diphosphate and the Initiating Nucleoside Triphosphate Account for Inhibition of rRNA Transcription in Fructose-1,6-Diphosphate Aldolase (fda) Mutants , 2003, Journal of bacteriology.
[77] E. Lund,et al. Metabolism of guanosine tetraphosphate in Escherichia coli. , 1972, European journal of biochemistry.
[78] Dong-Eun Chang,et al. Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model , 2002, Molecular microbiology.
[79] Lucy Shapiro,et al. DNA methylation affects the cell cycle transcription of the CtrA global regulator in Caulobacter , 2002, The EMBO journal.
[80] L. Du,et al. The Genetic Basis of Laboratory Adaptation in Caulobacter crescentus , 2010, Journal of bacteriology.
[81] Honglak Lee,et al. High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons , 2007, Nature Biotechnology.
[82] D. S. Weiss,et al. The Escherichia coli Cell Division Protein FtsW Is Required To Recruit Its Cognate Transpeptidase, FtsI (PBP3), to the Division Site , 2002, Journal of bacteriology.
[83] J. Kalinowski,et al. Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p)ppGpp synthase , 2006, BMC Genomics.
[84] Xiaoming Yang,et al. Involvement of the N Terminus of Ribosomal Protein L11 in Regulation of the RelA Protein of Escherichia coli , 2001, Journal of bacteriology.
[85] A. L. Koch,et al. The adaptive responses of Escherichia coli to a feast and famine existence. , 1971, Advances in microbial physiology.
[86] B. Belitsky,et al. Absence of accumulation of ppGpp and RNA during amino acid starvation in Rhizobium meliloti. , 1982, The Journal of biological chemistry.
[87] Dan Siegal-Gaskins,et al. Interaction specificity, toxicity and regulation of a paralogous set of ParE/RelE‐family toxin–antitoxin systems , 2010, Molecular microbiology.
[88] G. Schreiber,et al. ppGpp-mediated regulation of DNA replication and cell division in Escherichia coli , 2004, Current Microbiology.
[89] Frederick R. Blattner,et al. Transcription Profiling of the Stringent Response in Escherichia coli , 2007, Journal of bacteriology.
[90] B. Ely,et al. Regulation of Caulobacter crescentus ilvBN gene expression , 1994, Journal of bacteriology.
[91] Rachel L. Edwards,et al. SpoT governs Legionella pneumophila differentiation in host macrophages , 2009, Molecular microbiology.
[92] R. Gourse,et al. Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP. , 2001, Journal of molecular biology.
[93] Thomas Nyström,et al. Bacterial senescence: protein oxidation in non‐proliferating cells is dictated by the accuracy of the ribosomes , 2001, The EMBO journal.
[94] W. Haseltine,et al. Synthesis of guanosine tetra- and pentaphosphate requires the presence of a codon-specific, uncharged transfer ribonucleic acid in the acceptor site of ribosomes. , 1973, Proceedings of the National Academy of Sciences of the United States of America.
[95] S. Lovett,et al. The Stringent Response and Cell Cycle Arrest in Escherichia coli , 2008, PLoS genetics.