Tracing isolates from domestic human Campylobacter jejuni infections to chicken slaughter batches and swimming water using whole-genome multilocus sequence typing.
暂无分享,去创建一个
Sara Kovanen | Mirko Rossi | Marja-Liisa Hänninen | Marjaana Hakkinen | M. Hänninen | M. Hakkinen | R. Kivistö | M. Rossi | U. Kärkkäinen | Rauni Kivistö | Ann-Katrin Llarena | Ji Zhang | Ulla-Maija Kärkkäinen | Tamara Tuuminen | Jaakko Uksila | T. Tuuminen | S. Kovanen | J. Uksila | Ann-Katrin Llarena | Ji Zhang
[1] M. Hänninen,et al. Genomic Variation between Campylobacter jejuni Isolates Associated with Milk-Borne-Disease Outbreaks , 2014, Journal of Clinical Microbiology.
[2] M. Hänninen,et al. Campylobacter spp., Giardia spp., Cryptosporidium spp., Noroviruses, and Indicator Organisms in Surface Water in Southwestern Finland, 2000-2001 , 2004, Applied and Environmental Microbiology.
[3] Efsa Publication,et al. Analysis of the baseline survey on the prevalence of Campylobacter in broiler batches and of Campylobacter and Salmonella on broiler carcasses in the EU, 2008, Part A: Campylobacter and Salmonella prevalence estimates , 2010 .
[4] M. B. Skirrow,et al. Campylobacter enteritis: a "new" disease. , 1977, British medical journal.
[5] Daniel J. Wilson,et al. Tracing the Source of Campylobacteriosis , 2008, PLoS genetics.
[6] N. French,et al. Risk Factors for Campylobacteriosis of Chicken, Ruminant, and Environmental Origin: A Combined Case-Control and Source Attribution Analysis , 2012, PloS one.
[7] A. Siitonen,et al. Chickens and Cattle as Sources of Sporadic Domestically Acquired Campylobacter jejuni Infections in Finland , 2009, Applied and Environmental Microbiology.
[8] M. Hänninen,et al. Temporal and Geographical Distribution and Overlap of Penner Heat-Stable Serotypes and Pulsed-Field Gel Electrophoresis Genotypes of Campylobacter jejuni Isolates Collected from Humans and Chickens in Finland during a Seasonal Peak , 2003, Journal of Clinical Microbiology.
[9] Sergey I. Nikolenko,et al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..
[10] Keith A. Jolley,et al. A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter , 2012, Genes.
[11] S. Lévesque,et al. Campylobacteriosis in Urban versus Rural Areas: A Case-Case Study Integrated with Molecular Typing to Validate Risk Factors and to Attribute Sources of Infection , 2013, PloS one.
[12] M. Maiden,et al. Campylobacter sequence typing databases: applications and future prospects. , 2012, Microbiology.
[13] M. Hänninen,et al. Reduction of Campylobacter jejuni counts on chicken meat treated with different seasonings , 2011 .
[14] A. Siitonen,et al. Domestically Acquired Campylobacter Infections in Finland , 2004, Emerging infectious diseases.
[15] M. Hänninen,et al. Predominant Campylobacter jejuni Sequence Types Persist in Finnish Chicken Production , 2015, PloS one.
[16] Mirko Rossi,et al. Refinement of Whole-Genome Multilocus Sequence Typing Analysis by Addressing Gene Paralogy , 2015, Journal of Clinical Microbiology.
[17] D. Huson,et al. Application of phylogenetic networks in evolutionary studies. , 2006, Molecular biology and evolution.
[18] L. Matthews,et al. Using sequence data to identify alternative routes and risk of infection: a case-study of campylobacter in Scotland , 2012, BMC Infectious Diseases.
[19] M. Hänninen,et al. Genetic heterogeneity of Campylobacter jejuni NCTC 11168 upon human infection. , 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[20] J. Corander,et al. Multilocus Sequence Types of Environmental Campylobacter jejuni Isolates and their Similarities to those of Human, Poultry and Bovine C. jejuni Isolates , 2013, Zoonoses and public health.
[21] Efsa Publication,et al. EFSA (European Food Safety Authority) and ECDC (European Centre for Disease Prevention and Control), 2015. The European Union summary report on trends and sources of zoonoses, zoonotic agents and food-borne outbreaks in 2014 , 2015 .
[22] L. Matthews,et al. Identifying the seasonal origins of human campylobacteriosis , 2012, Epidemiology and Infection.
[23] M. V. Tretyakov,et al. Phase variable genes of Campylobacter jejuni exhibit high mutation rates and specific mutational patterns but mutability is not the major determinant of population structure during host colonization , 2012, Nucleic acids research.
[24] F. Haesebrouck,et al. Poultry as a host for the zoonotic pathogen Campylobacter jejuni. , 2012, Vector borne and zoonotic diseases.
[25] Keith A. Jolley,et al. Real-Time Genomic Epidemiological Evaluation of Human Campylobacter Isolates by Use of Whole-Genome Multilocus Sequence Typing , 2013, Journal of Clinical Microbiology.
[26] M. Hänninen,et al. Multilocus Sequence Typing (MLST) and Whole-Genome MLST of Campylobacter jejuni Isolates from Human Infections in Three Districts during a Seasonal Peak in Finland , 2014, Journal of Clinical Microbiology.
[27] Martin C. J. Maiden,et al. BIGSdb: Scalable analysis of bacterial genome variation at the population level , 2010, BMC Bioinformatics.
[28] Ken J Forbes,et al. Campylobacter genotypes from food animals, environmental sources and clinical disease in Scotland 2005/6. , 2009, International journal of food microbiology.