Biodegradation and Rhodococcus--masters of catabolic versatility.

[1]  C. Allen,et al.  Web-Type Evolution of Rhodococcus Gene Clusters Associated with Utilization of Naphthalene , 2005, Applied and Environmental Microbiology.

[2]  M. Marra,et al.  Functional Characterization of a Catabolic Plasmid from Polychlorinated- Biphenyl-Degrading Rhodococcus sp. Strain RHA1 , 2004, Journal of bacteriology.

[3]  M. Sancelme,et al.  Metabolism of 2-Mercaptobenzothiazole by Rhodococcus rhodochrous , 2004, Applied and Environmental Microbiology.

[4]  M. Fukuda,et al.  Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1. , 2004, Journal of molecular biology.

[5]  M. Tanokura,et al.  Crystallization and preliminary X-ray analyses of desulfurization enzyme DszB and its C27S mutant complexed with biphenyl-2-sulfinic acid. , 2004, Acta crystallographica. Section D, Biological crystallography.

[6]  D. Eulberg,et al.  A linear megaplasmid, p1CP, carrying the genes for chlorocatechol catabolism of Rhodococcus opacus 1CP. , 2004, Microbiology.

[7]  Guangwei Fan,et al.  Complete Genome Sequence of Rickettsia typhi and Comparison with Sequences of Other Rickettsiae , 2004, Journal of bacteriology.

[8]  N. Tamura,et al.  Isolation and characterization of the Rhodococcus opacus thiostrepton-inducible genes tipAL and tipAS: application for recombinant protein expression in Rhodococcus. , 2004, FEMS microbiology letters.

[9]  Yong-Hak Kim,et al.  Degradation of Alkyl Ethers, Aralkyl Ethers, and Dibenzyl Ether by Rhodococcus sp. Strain DEE5151, Isolated from Diethyl Ether-Containing Enrichment Cultures , 2004, Applied and Environmental Microbiology.

[10]  Jizhong Zhou,et al.  Detection of Genes Involved in Biodegradation and Biotransformation in Microbial Communities by Using 50-Mer Oligonucleotide Microarrays , 2004, Applied and Environmental Microbiology.

[11]  Fred J. Brockman,et al.  Geomicrobiology of High-Level Nuclear Waste-Contaminated Vadose Sediments at the Hanford Site, Washington State , 2004, Applied and Environmental Microbiology.

[12]  A. Scozzafava,et al.  Crystal Structure of 4-Chlorocatechol 1,2-Dioxygenase from the Chlorophenol-utilizing Gram-positive Rhodococcus opacus 1CP* , 2004, Journal of Biological Chemistry.

[13]  Carla C. C. R. de Carvalho,et al.  Mycobacterium sp., Rhodococcus erythropolis, and Pseudomonas putida behavior in the presence of organic solvents , 2004, Microscopy research and technique.

[14]  R. Seviour,et al.  Can whole genome analysis refine the taxonomy of the genus Rhodococcus? , 2004, FEMS microbiology reviews.

[15]  L. Dijkhuizen,et al.  Harnessing the catabolic diversity of rhodococci for environmental and biotechnological applications. , 2004, Current opinion in microbiology.

[16]  F. Monot,et al.  Relation between bacterial strain resistance to solvents and biodesulfurization activity in organic medium , 2004, Applied Microbiology and Biotechnology.

[17]  H. Knackmuss,et al.  Nitrite Elimination and Hydrolytic Ring Cleavage in 2,4,6-Trinitrophenol (Picric Acid) Degradation , 2004, Applied and Environmental Microbiology.

[18]  L. Whyte,et al.  A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil. , 2004, Canadian journal of microbiology.

[19]  A. Sinskey,et al.  Indene bioconversion by a toluene inducible dioxygenase of Rhodococcus sp. I24 , 2004, Applied Microbiology and Biotechnology.

[20]  B. Erable,et al.  Haloalkane hydrolysis by Rhodococcus erythropolis cells: Comparison of conventional aqueous phase dehalogenation and nonconventional gas phase dehalogenation , 2004, Biotechnology and bioengineering.

[21]  M. Fukuda,et al.  Characterization of Transcriptional Regulatory Genes for Biphenyl Degradation in Rhodococcus sp. Strain RHA1 , 2004, Journal of bacteriology.

[22]  N. Saunders,et al.  The diversity within an expanded and redefined repertoire of phase-variable genes in Helicobacter pylori. , 2004, Microbiology.

[23]  Rolf D. Schmid,et al.  DNA isolation from soil samples for cloning in different hosts , 2004, Applied Microbiology and Biotechnology.

[24]  J. Hawari,et al.  Biodegradation of the Hexahydro-1,3,5-Trinitro-1,3,5-Triazine Ring Cleavage Product 4-Nitro-2,4-Diazabutanal by Phanerochaete chrysosporium , 2004, Applied and Environmental Microbiology.

[25]  J. Altenbuchner,et al.  NpdR, a Repressor Involved in 2,4,6-Trinitrophenol Degradation in Rhodococcus opacus HL PM-1 , 2004, Journal of bacteriology.

[26]  T. Kudo,et al.  Multiplicity of 2,3-Dihydroxybiphenyl Dioxygenase Genes in the Gram-positive Polychlorinated Biphenyl Degrading Bacterium Rhodococcus rhodochrous K37 , 2004, Bioscience, biotechnology, and biochemistry.

[27]  M. Fukuda,et al.  Biphenyl-inducible Promoters in a Polychlorinated Biphenyl-degrading Bacterium, Rhodococcus sp. RHA1 , 2004, Bioscience, biotechnology, and biochemistry.

[28]  Eduardo P C Rocha,et al.  Gene essentiality determines chromosome organisation in bacteria. , 2003, Nucleic acids research.

[29]  P. Hellín,et al.  Isolation and characterisation of resistant-to-fermentation carbohydrate polymers from cultures of Rhizopus nigricans grown on agrofood waste materials , 2003, Biotechnology Letters.

[30]  R. Prince,et al.  Substrate Preferences in Biodesulfurization of Diesel Range Fuels by Rhodococcus sp. Strain ECRD-1 , 2003, Applied and Environmental Microbiology.

[31]  J. G. Leahy,et al.  Evolution of the soluble diiron monooxygenases. , 2003, FEMS microbiology reviews.

[32]  A. Bull,et al.  Diversity of Nitrile Hydratase and Amidase Enzyme Genes in Rhodococcus erythropolis Recovered from Geographically Distinct Habitats , 2003, Applied and Environmental Microbiology.

[33]  G. Gottschalk,et al.  Complete Nucleotide Sequence and Genetic Organization of the 210-Kilobase Linear Plasmid of Rhodococcus erythropolis BD2 , 2003, Journal of bacteriology.

[34]  K. Maruhashi,et al.  Recombinant Pseudomonas putida carrying both the dsz and hcu genes can desulfurize dibenzothiophene in n-tetradecane , 2003, Biotechnology Letters.

[35]  K. Timmis,et al.  Substrate Specificity and Expression of Three 2,3-Dihydroxybiphenyl 1,2-Dioxygenases from Rhodococcus globerulus Strain P6 , 2003, Journal of bacteriology.

[36]  J. Parkhill,et al.  Multiple inverted DNA repeats of Bacteroides fragilis that control polysaccharide antigenic variation are similar to the hin region inverted repeats of Salmonella typhimurium. , 2003, Microbiology.

[37]  F. Monot,et al.  Roles of tert-butyl formate, tert-butyl alcohol and acetone in the regulation of methyl tert-butyl ether degradation by Mycobacterium austroafricanum IFP 2012 , 2003, Applied Microbiology and Biotechnology.

[38]  H. Görisch,et al.  Biodegradation of bis(1-chloro-2-propyl) ether via initial ether scission and subsequent dehalogenation by Rhodococcus sp. strain DTB , 2003, Archives of Microbiology.

[39]  L. Eltis,et al.  Characterization of Extradiol Dioxygenases from a Polychlorinated Biphenyl-Degrading Strain That Possess Higher Specificities for Chlorinated Metabolites , 2003, Journal of bacteriology.

[40]  L. Gakhar,et al.  Crystallization and preliminary X-ray diffraction analysis of naphthalene dioxygenase from Rhodococcus sp. strain NCIMB 12038. , 2002, Acta crystallographica. Section D, Biological crystallography.

[41]  B. Witholt,et al.  Gene Cloning and Characterization of Multiple Alkane Hydroxylase Systems in Rhodococcus Strains Q15 and NRRL B-16531 , 2002, Applied and Environmental Microbiology.

[42]  K. Maruhashi,et al.  Cloning of a rhodococcal promoter using a transposon for dibenzothiophene biodesulfurization , 2002, Biotechnology Letters.

[43]  B. Witholt,et al.  Alkane hydroxylase homologues in Gram-positive strains. , 2002, Environmental microbiology.

[44]  A. Parret,et al.  A novel class of self-sufficient cytochrome P450 monooxygenases in prokaryotes. , 2002, Trends in microbiology.

[45]  E. Travis,et al.  Cloning, Sequencing, and Characterization of the Hexahydro-1,3,5-Trinitro-1,3,5-Triazine Degradation Gene Cluster from Rhodococcus rhodochrous , 2002, Applied and Environmental Microbiology.

[46]  K. Kino,et al.  Biodesulfurization of Naphthothiophene and Benzothiophene through Selective Cleavage of Carbon-Sulfur Bonds by Rhodococcus sp. Strain WU-K2R , 2002, Applied and Environmental Microbiology.

[47]  N. Turner,et al.  Identification of a New Class of Cytochrome P450 from a Rhodococcus sp , 2002, Journal of bacteriology.

[48]  G. Zylstra,et al.  Monocyclic Aromatic Hydrocarbon Degradation by Rhodococcus sp. Strain DK17 , 2002, Applied and Environmental Microbiology.

[49]  Dick B. Janssen,et al.  Biodegradation of 1,2,3-Trichloropropane through Directed Evolution and Heterologous Expression of a Haloalkane Dehalogenase Gene , 2002, Applied and Environmental Microbiology.

[50]  V. Wray,et al.  Alkanotrophic Rhodococcus ruber as a biosurfactant producer , 2002, Applied Microbiology and Biotechnology.

[51]  Eduardo P C Rocha,et al.  Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution. , 2002, Nucleic acids research.

[52]  R. Kurane,et al.  Biodesulfurization of benzothiophene and dibenzothiophene by a newly isolated Rhodococcus strain , 2002, Applied Microbiology and Biotechnology.

[53]  M. Takeuchi,et al.  Rhodococcus jostii sp. nov., isolated from a medieval grave. , 2002, International journal of systematic and evolutionary microbiology.

[54]  Wilfried Wackernagel,et al.  Integration of foreign DNA during natural transformation of Acinetobacter sp. by homology-facilitated illegitimate recombination , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[55]  T. Kudo,et al.  Isolation and Characterization of Dibenzofuran-degrading Actinomycetes: Analysis of Multiple Extradiol Dioxygenase Genes in Dibenzofuran-degrading Rhodococcus Species , 2002, Bioscience, biotechnology, and biochemistry.

[56]  F. Kunst,et al.  Cloning of a Genetically Unstable Cytochrome P-450 Gene Cluster Involved in Degradation of the Pollutant Ethyltert-Butyl Ether by Rhodococcus ruber , 2001, Journal of bacteriology.

[57]  M. Fukuda,et al.  Cloning and Characterization of Benzoate Catabolic Genes in the Gram-Positive Polychlorinated Biphenyl DegraderRhodococcus sp. Strain RHA1 , 2001, Journal of bacteriology.

[58]  M. Fukuda,et al.  Characterization of the 450-kb Linear Plasmid in a Polychlorinated Biphenyl Degrader, Rhodococcus sp. Strain RHA1 , 2001, Applied and Environmental Microbiology.

[59]  U. Stahl,et al.  Insights into the genetic diversity of initial dioxygenases from PAH-degrading bacteria , 2001, Applied Microbiology and Biotechnology.

[60]  Y. Kho,et al.  Rhodococcus pyridinivorans sp. nov., a pyridine-degrading bacterium. , 2000, International journal of systematic and evolutionary microbiology.

[61]  D. Gibson,et al.  Aromatic hydrocarbon dioxygenases in environmental biotechnology. , 2000, Current opinion in biotechnology.

[62]  D. Janssen,et al.  Haloalkane-Utilizing Rhodococcus Strains Isolated from Geographically Distinct Locations Possess a Highly Conserved Gene Cluster Encoding Haloalkane Catabolism , 2000, Journal of bacteriology.

[63]  D. Janssen,et al.  Roles of Horizontal Gene Transfer and Gene Integration in Evolution of 1,3-Dichloropropene- and 1,2-Dibromoethane-Degradative Pathways , 2000, Journal of bacteriology.

[64]  T C Terwilliger,et al.  Dialysis against a Solution Containing 50 Mm Na 2 so 4 and 1 Mm Edta, with the Ph Adjusted to 8.2, Using 1 N H 2 so 4 , 1999 .

[65]  C. Allen,et al.  Purification and Characterization of a Novel Naphthalene Dioxygenase from Rhodococcus sp. Strain NCIMB12038 , 1999, Journal of bacteriology.

[66]  J. Lawrence,et al.  Physiological Adaptations Involved in Alkane Assimilation at a Low Temperature by Rhodococcus sp. Strain Q15 , 1999, Applied and Environmental Microbiology.

[67]  J. Philp,et al.  The genus Rhodococcus , 1998, Journal of applied microbiology.

[68]  T. Curtis,et al.  In situ detection of rhodococci associated with activated sludge foams , 1998, Antonie van Leeuwenhoek.

[69]  W. Duetz,et al.  A 3-(3-hydroxyphenyl)propionic acid catabolic pathway in Rhodococcus globerulus PWD1: cloning and characterization of the hpp operon , 1997, Journal of bacteriology.

[70]  M. Kobayashi,et al.  Transcriptional regulation of the Rhodococcus rhodochrous J1 nitA gene encoding a nitrilase. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[71]  G. Schoofs,et al.  Degradation of the thiocarbamate herbicide EPTC (S-ethyl dipropylcarbamothioate) and biosafening by Rhodococcus sp. strain NI86/21 involve an inducible cytochrome P-450 system and aldehyde dehydrogenase , 1995, Journal of bacteriology.

[72]  J. Hamilton,et al.  Haloalkane degradation and assimilation by Rhodococcus rhodochrous NCIMB 13064. , 1994, Microbiology.

[73]  K. Timmis,et al.  Two independently regulated cytochromes P-450 in a Rhodococcus rhodochrous strain that degrades 2-ethoxyphenol and 4-methoxybenzoate , 1993, Journal of bacteriology.

[74]  L. Narhi,et al.  Characterization of a catalytically self-sufficient 119,000-dalton cytochrome P-450 monooxygenase induced by barbiturates in Bacillus megaterium. , 1986, The Journal of biological chemistry.

[75]  H. Sträuber,et al.  Evidence of Cytochrome P450-Catalyzed Cleavage of the Ether Bond of Phenoxybutyrate Herbicides in Rhodococcus Erythropolis K2-3 , 2004, Biodegradation.

[76]  A. Bull,et al.  Nitrile hydrolysing activities of deep-sea and terrestrial mycolate actinomycetes , 2004, Antonie van Leeuwenhoek.

[77]  I. Nagy,et al.  Applied aspects of Rhodococcus genetics , 2004, Antonie van Leeuwenhoek.

[78]  J. Salanitro,et al.  Rhodococcus aetherivorans sp. nov., a new species that contains methyl t-butyl ether-degrading actinomycetes. , 2004, Systematic and applied microbiology.

[79]  A. Sinskey,et al.  Engineering an indene bioconversion process for the production of cis-aminoindanol: a model system for the production of chiral synthons , 2002, Applied Microbiology and Biotechnology.

[80]  E. Topp,et al.  The triazine hydrolase gene trzN from Nocardioides sp. strain C190: cloning and construction of gene-specific primers. , 2002, FEMS microbiology letters.

[81]  A. Danchin.  Genomics of GC-rich gram-positive bacteria , 2002 .

[82]  A. de Schrijver,et al.  Degradation of pesticides by actinomycetes. , 1999, Critical reviews in microbiology.

[83]  C. A. Fewson,et al.  Biotransformations catalyzed by the genus Rhodococcus. , 1994, Critical reviews in biotechnology.

[84]  W. Finnerty.  The biology and genetics of the genus Rhodococcus. , 1992, Annual review of microbiology.

[85]  D. Gibson.  Microbial degradation of organic compounds. , 1984 .