Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome

[1]  C. Pieterse,et al.  Microbial small molecules - weapons of plant subversion. , 2018, Natural product reports.

[2]  S. Hacquard,et al.  Microbial interactions within the plant holobiont , 2018, Microbiome.

[3]  Elizabeth A. Shank,et al.  Large-Scale Bioinformatics Analysis of Bacillus Genomes Uncovers Conserved Roles of Natural Products in Bacterial Physiology , 2017, mSystems.

[4]  A. Shade,et al.  A Synthetic Community System for Probing Microbial Interactions Driven by Exometabolites , 2017, mSystems.

[5]  S. Sørensen,et al.  Antagonism correlates with metabolic similarity in diverse bacteria , 2017, Proceedings of the National Academy of Sciences.

[6]  S. Chatterjee,et al.  Xanthoferrin, the α-hydroxycarboxylate-type siderophore of Xanthomonas campestris pv. campestris, is required for optimum virulence and growth inside cabbage. , 2017, Molecular plant pathology.

[7]  Daniel B. Müller,et al.  Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research. , 2017, Cell host & microbe.

[8]  L. Dijkhuizen,et al.  Genome-based exploration of the specialized metabolic capacities of the genus Rhodococcus , 2017, BMC Genomics.

[9]  Kai Blin,et al.  antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification , 2017, Nucleic Acids Res..

[10]  Renzo Kottmann,et al.  The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters , 2016, Nucleic Acids Res..

[11]  R. Fani,et al.  Antagonistic interactions between endophytic cultivable bacterial communities isolated from the medicinal plant Echinacea purpurea. , 2016, Environmental microbiology.

[12]  Kristian Fog Nielsen,et al.  Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking , 2016, Nature Biotechnology.

[13]  Olga T. Schubert,et al.  Systems-level Proteomics of Two Ubiquitous Leaf Commensals Reveals Complementary Adaptive Traits for Phyllosphere Colonization* , 2016, Molecular & Cellular Proteomics.

[14]  Wai-Leung Ng,et al.  Specificity and complexity in bacterial quorum-sensing systems , 2016, FEMS microbiology reviews.

[15]  V. Venturi,et al.  Signaling in the Rhizosphere. , 2016, Trends in plant science.

[16]  D. Newman,et al.  Natural Products as Sources of New Drugs from 1981 to 2014. , 2016, Journal of natural products.

[17]  Jörn Piel,et al.  Biosynthesis of polyketides by trans-AT polyketide synthases. , 2016, Natural product reports.

[18]  G. Sandmann,et al.  Aryl Polyenes, a Highly Abundant Class of Bacterial Natural Products, Are Functionally Related to Antioxidative Carotenoids , 2016, Chembiochem : a European journal of chemical biology.

[19]  Robert D. Finn,et al.  The Pfam protein families database: towards a more sustainable future , 2015, Nucleic Acids Res..

[20]  Alice C. McHardy,et al.  Functional overlap of the Arabidopsis leaf and root microbiota , 2015, Nature.

[21]  Maureen Hillenmeyer,et al.  Evolution of chemical diversity by coordinated gene swaps in type II polyketide gene clusters , 2015, Proceedings of the National Academy of Sciences.

[22]  S Gnanakaran,et al.  Permeability Barrier of Gram-Negative Cell Envelopes and Approaches To Bypass It. , 2015, ACS infectious diseases.

[23]  R. Ueoka,et al.  Metabolic and evolutionary origin of actin-binding polyketides from diverse organisms. , 2015, Nature chemical biology.

[24]  J. Vorholt,et al.  Metabolic footprint of epiphytic bacteria on Arabidopsis thaliana leaves , 2015, The ISME Journal.

[25]  Carla S. Jones,et al.  Minimum Information about a Biosynthetic Gene cluster. , 2015, Nature chemical biology.

[26]  Timothy L. Tickle,et al.  Compact graphical representation of phylogenetic data and metadata with GraPhlAn , 2015, PeerJ.

[27]  Peter Cimermancic,et al.  A Systematic Analysis of Biosynthetic Gene Clusters in the Human Microbiome Reveals a Common Family of Antibiotics , 2014, Cell.

[28]  C. Sung,et al.  Antibacterial activities of bacteriocins: application in foods and pharmaceuticals , 2014, Front. Microbiol..

[29]  Christian Rinke,et al.  An environmental bacterial taxon with a large and distinct metabolic repertoire , 2014, Nature.

[30]  P. Dorrestein,et al.  Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A , 2014, Proceedings of the National Academy of Sciences.

[31]  Georg Fritz,et al.  The Bacillus BioBrick Box: generation and evaluation of essential genetic building blocks for standardized work with Bacillus subtilis , 2013, Journal of Biological Engineering.

[32]  Micheal C. Wilson,et al.  Metagenomic approaches for exploiting uncultivated bacteria as a resource for novel biosynthetic enzymology. , 2013, Chemistry & biology.

[33]  R. Saha,et al.  Microbial siderophores: a mini review , 2013, Journal of basic microbiology.

[34]  J. Ju,et al.  Marthiapeptide A, an anti-infective and cytotoxic polythiazole cyclopeptide from a 60 L scale fermentation of the deep sea-derived Marinactinospora thermotolerans SCSIO 00652. , 2012, Journal of natural products.

[35]  J. Vorholt Microbial life in the phyllosphere , 2012, Nature Reviews Microbiology.

[36]  Pieter C. Dorrestein,et al.  Primer on Agar-Based Microbial Imaging Mass Spectrometry , 2012, Journal of bacteriology.

[37]  J. Piel,et al.  Insights into the biosynthesis of hormaomycin, an exceptionally complex bacterial signaling metabolite. , 2011, Chemistry & biology.

[38]  S. Brady,et al.  Recent application of metagenomic approaches toward the discovery of antimicrobials and other bioactive small molecules. , 2010, Current opinion in microbiology.

[39]  P. Leadlay,et al.  Biosynthesis of the putative siderophore erythrochelin requires unprecedented crosstalk between separate nonribosomal peptide gene clusters. , 2010, Chemistry & biology.

[40]  K. Ishida,et al.  Closthioamide: an unprecedented polythioamide antibiotic from the strictly anaerobic bacterium Clostridium cellulolyticum. , 2010, Angewandte Chemie.

[41]  C. Mlot Microbiology. Antibiotics in nature: beyond biological warfare. , 2009, Science.

[42]  G. Challis,et al.  Recent advances in siderophore biosynthesis. , 2009, Current opinion in chemical biology.

[43]  Jean-Charles Portais,et al.  Demonstration of the ethylmalonyl-CoA pathway by using 13C metabolomics , 2009, Proceedings of the National Academy of Sciences.

[44]  Brian F. Pfleger,et al.  Biosynthetic Analysis of the Petrobactin Siderophore Pathway from Bacillusanthracis , 2006, Journal of bacteriology.

[45]  R. Müller,et al.  The unique DKxanthene secondary metabolite family from the myxobacterium Myxococcus xanthus is required for developmental sporulation , 2006, Proceedings of the National Academy of Sciences.

[46]  F. de la Calle,et al.  Deciphering the Biosynthesis Pathway of the Antitumor Thiocoraline from a Marine Actinomycete and Its Expression in Two Streptomyces Species , 2006, Chembiochem : a European journal of chemical biology.

[47]  G. Challis,et al.  Identification of a cluster of genes that directs desferrioxamine biosynthesis in Streptomyces coelicolor M145. , 2004, Journal of the American Chemical Society.

[48]  F. Cazorla,et al.  Mangotoxin: a novel antimetabolite toxin produced by Pseudomonas syringae inhibiting ornithine/arginine biosynthesis , 2003 .

[49]  S. Lindow,et al.  Microbiology of the Phyllosphere , 2003, Applied and Environmental Microbiology.

[50]  R. Pukall,et al.  Streptocidins A-D, novel cyclic decapeptide antibiotics produced by Streptomyces sp. Tü 6071. I. Taxonomy, fermentation, isolation and biological activities. , 2001, The Journal of antibiotics.

[51]  J. Handelsman,et al.  Cloning the Soil Metagenome: a Strategy for Accessing the Genetic and Functional Diversity of Uncultured Microorganisms , 2000, Applied and Environmental Microbiology.

[52]  M. Marahiel,et al.  The tyrocidine biosynthesis operon of Bacillus brevis: complete nucleotide sequence and biochemical characterization of functional internal adenylation domains , 1997, Journal of bacteriology.

[53]  C. Hertweck,et al.  Antibiotics from neglected bacterial sources. , 2014, International journal of medical microbiology : IJMM.

[54]  Víctor de Lorenzo,et al.  The Standard European Vector Architecture (SEVA) plasmid toolkit. , 2014, Methods in molecular biology.

[55]  M. Mazzola,et al.  Diversity and natural functions of antibiotics produced by beneficial and plant pathogenic bacteria. , 2012, Annual review of phytopathology.

[56]  Pieter C Dorrestein,et al.  Microbial metabolic exchange--the chemotype-to-phenotype link. , 2011, Nature chemical biology.

[57]  P. Dewick Medicinal Natural Products: A Biosynthetic Approach, 3Rd Edition , 2011 .

[58]  Bonnie L. Bassler,et al.  Bacterially Speaking , 2006, Cell.

[59]  J. Leveau,et al.  Phyllosphere microbiology. , 2002, Current opinion in biotechnology.