The Mouse Cytosine-5 RNA Methyltransferase NSun2 Is a Component of the Chromatoid Body and Required for Testis Differentiation

ABSTRACT Posttranscriptional regulatory mechanisms are crucial for protein synthesis during spermatogenesis and are often organized by the chromatoid body. Here, we identify the RNA methyltransferase NSun2 as a novel component of the chromatoid body and, further, show that NSun2 is essential for germ cell differentiation in the mouse testis. In NSun2-depleted testes, genes encoding Ddx4, Miwi, and Tudor domain-containing (Tdr) proteins are repressed, indicating that RNA-processing and posttranscriptional pathways are impaired. Loss of NSun2 specifically blocked meiotic progression of germ cells into the pachytene stage, as spermatogonial and Sertoli cells were unaffected in knockout mice. We observed the same phenotype when we simultaneously deleted NSun2 and Dnmt2, the only other cytosine-5 RNA methyltransferase characterized to date, indicating that Dnmt2 was not functionally redundant with NSun2 in spermatogonial stem cells or Sertoli cells. Specific NSun2- and Dnmt2-methylated tRNAs decreased in abundance when both methyltransferases were deleted, suggesting that RNA methylation pathways play an essential role in male germ cell differentiation.

[1]  M. Yokoyama,et al.  The mouse homolog of Drosophila Vasa is required for the development of male germ cells. , 2000, Genes & development.

[2]  D. Hernandez-Verdun,et al.  Emerging concepts of nucleolar assembly. , 2002, Journal of cell science.

[3]  R. Jessberger,et al.  Tdrd6 Is Required for Spermiogenesis, Chromatoid Body Architecture, and Regulation of miRNA Expression , 2009, Current Biology.

[4]  Alex E. Lash,et al.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..

[5]  I. Dragoni,et al.  The nucleolar RNA methyltransferase Misu (NSun2) is required for mitotic spindle stability , 2009, The Journal of cell biology.

[6]  S. Krawetz,et al.  Coordinate expression of the PRM1, PRM2, and TNP2 multigene locus in human testis. , 1995, DNA and cell biology.

[7]  I. Takeuchi,et al.  Ethanol-phosphotungstic acid and bismuth staining of spermatid nucleoli in mouse spermiogenesis. , 1990, Journal of structural biology.

[8]  Francesca Tuorto,et al.  RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. , 2010, Genes & development.

[9]  P. Durand,et al.  Localization and quantitative expression of mRNAs encoding the testis‐specific histone TH2B, the phosphoprotein p19, the transition proteins 1 and 2 during pubertal development and throughout the spermatogenic cycle of the rat , 1998, Molecular reproduction and development.

[10]  J. Turner,et al.  M31 and macroH2A1.2 colocalise at the pseudoautosomal region during mouse meiosis. , 2001, Journal of cell science.

[11]  M. Conti,et al.  RNA synthesis in spermatocytes and spermatids and preservation of meiotic RNA during spermiogenesis in the mouse. , 1977, Cell differentiation.

[12]  Henri Grosjean,et al.  Modification And Editing Of Rna , 1998 .

[13]  G. Chaldakov,et al.  Morphological evidence for calcium storage in the chromatoid body of rat spermatids , 1989, Experientia.

[14]  W. Deng,et al.  miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis. , 2002, Developmental cell.

[15]  Jean YH Yang,et al.  Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.

[16]  Yoichi Matsuda,et al.  Mili, a mammalian member of piwi family gene, is essential for spermatogenesis , 2004, Development.

[17]  C. Sette,et al.  Role of RNA-binding proteins in mammalian spermatogenesis. , 2010, International journal of andrology.

[18]  P. Agris Decoding the genome: a modified view. , 2004, Nucleic acids research.

[19]  Anton J. Enright,et al.  The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements , 2011, Nature.

[20]  G. Hannon,et al.  MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline. , 2007, Developmental cell.

[21]  Ravi Sachidanandam,et al.  Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing , 2011, Nature.

[22]  Henri Grosjean,et al.  Fine-tuning of RNA functions by modification and editing , 2005 .

[23]  R. Sharpe,et al.  Proliferation and functional maturation of Sertoli cells, and their relevance to disorders of testis function in adulthood. , 2003, Reproduction.

[24]  C. Semple,et al.  Mouse MAELSTROM: the link between meiotic silencing of unsynapsed chromatin and microRNA pathway? , 2006, Human molecular genetics.

[25]  P. de Boer,et al.  SHORT COMMUNICATIONS A drying-down technique for the spreading of mammalian meiocytes from the male and female germline , 1997, Chromosome Research.

[26]  Paolo Sassone-Corsi,et al.  The chromatoid body of male germ cells: similarity with processing bodies and presence of Dicer and microRNA pathway components. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[27]  T. Preiss,et al.  Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA , 2012, Nucleic acids research.

[28]  D. Hernandez-Verdun Assembly and disassembly of the nucleolus during the cell cycle , 2011, Nucleus.

[29]  S. Richard,et al.  Sam68 marks the transcriptionally active stages of spermatogenesis and modulates alternative splicing in male germ cells , 2011, Nucleic acids research.

[30]  M. Helm,et al.  tRNA stabilization by modified nucleotides. , 2010, Biochemistry.

[31]  I. Eperon,et al.  The roles of RNA-binding proteins in spermatogenesis and male infertility. , 1999, Current opinion in genetics & development.

[32]  Kenichiro Hata,et al.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes. , 2008, Genes & development.

[33]  D. G. Rooij Proliferation and differentiation of spermatogonial stem cells , 2001 .

[34]  R. Geremia,et al.  Biochemistry of male germ cell differentiation in mammals: RNA synthesis in meiotic and postmeiotic cells. , 1978, Current topics in developmental biology.

[35]  R. Schultz,et al.  The DNA/RNA-binding protein MSY2 marks specific transcripts for cytoplasmic storage in mouse male germ cells. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[36]  B. Cairns,et al.  Dnmt2 functions in the cytoplasm to promote liver, brain, and retina development in zebrafish. , 2007, Genes & development.

[37]  M. Griswold,et al.  The mammalian doublesex homolog DMRT1 is a transcriptional gatekeeper that controls the mitosis versus meiosis decision in male germ cells. , 2010, Developmental cell.

[38]  Simon Tavaré,et al.  beadarray: R classes and methods for Illumina bead-based data , 2007, Bioinform..

[39]  D. Phillips,et al.  Observations on the fine structure and relationships of the chromatoid body in mammalian spermatogenesis. , 1970, Biology of reproduction.

[40]  Mark J. Dunning,et al.  BASH: a tool for managing BeadArray spatial artefacts , 2008, Bioinform..

[41]  D. D. de Rooij Proliferation and differentiation of spermatogonial stem cells. , 2001, Reproduction.

[42]  F. Watt,et al.  The RNA Methyltransferase Misu (NSun2) Mediates Myc-Induced Proliferation and Is Upregulated in Tumors , 2006, Current Biology.

[43]  D. Comings,et al.  The chromatoid body in mouse spermatogenesis: evidence that it may be formed by the extrusion of nucleolar components. , 1972, Journal of ultrastructure research.

[44]  R. Braun,et al.  Post-transcriptional control of gene expression during spermatogenesis. , 1998, Seminars in cell & developmental biology.

[45]  Frank Lyko,et al.  5-methylcytosine in RNA: detection, enzymatic formation and biological functions , 2009, Nucleic acids research.

[46]  Ravi Sachidanandam,et al.  Developmentally Regulated piRNA Clusters Implicate MILI in Transposon Control , 2007, Science.

[47]  J. Nichols,et al.  The RNA–Methyltransferase Misu (NSun2) Poises Epidermal Stem Cells to Differentiate , 2011, PLoS genetics.

[48]  Rafael A. Irizarry,et al.  Bioinformatics and Computational Biology Solutions using R and Bioconductor , 2005 .

[49]  F. Ebling,et al.  Atypical development of Sertoli cells and impairment of spermatogenesis in the hypogonadal (hpg) mouse , 2005, Journal of anatomy.

[50]  Gordon K. Smyth,et al.  limma: Linear Models for Microarray Data , 2005 .

[51]  P. Sassone-Corsi,et al.  Opinion: The chromatoid body: a germ-cell-specific RNA-processing centre , 2007, Nature Reviews Molecular Cell Biology.

[52]  Xiaoyu Zhang,et al.  Methylation of tRNAAsp by the DNA Methyltransferase Homolog Dnmt2 , 2006, Science.

[53]  Y. Sheng,et al.  Gonadotropin-regulated testicular RNA helicase (GRTH/Ddx25) is essential for spermatid development and completion of spermatogenesis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[54]  Izabela Makałowska,et al.  Identification of human tRNA:m5C methyltransferase catalysing intron-dependent m5C formation in the first position of the anticodon of the pre-tRNA(CAA)Leu , 2006, Nucleic acids research.

[55]  D. Odom,et al.  The opposing transcriptional functions of Sin3A and c-Myc are required to maintain tissue homeostasis , 2011, Nature Cell Biology.

[56]  V. Monesi RIBONUCLEIC ACID SYNTHESIS DURING MITOSIS AND MEIOSIS IN THE MOUSE TESTIS , 1964, The Journal of cell biology.

[57]  A. Colonna,et al.  The nucleus as the site of tRNA methylation , 1980, Journal of cellular physiology.

[58]  R. Paniagua,et al.  Ultrastructural observations on nucleoli and related structures during human spermatogenesis , 2004, Anatomy and Embryology.

[59]  Jonathan Preall,et al.  Blanks, a nuclear siRNA/dsRNA-binding complex component, is required for Drosophila spermiogenesis , 2011, Proceedings of the National Academy of Sciences.

[60]  J. Venables,et al.  Lessons from knockout and transgenic mice for infertility in men , 2000, Journal of endocrinological investigation.

[61]  A. Noor,et al.  Mutation in NSUN2, which encodes an RNA methyltransferase, causes autosomal-recessive intellectual disability. , 2012, American journal of human genetics.

[62]  R. Braun,et al.  A double-stranded RNA binding protein required for activation of repressed messages in mammalian germ cells , 1999, Nature Genetics.

[63]  F. Tuorto,et al.  RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis , 2012, Nature Structural &Molecular Biology.

[64]  P. Sassone-Corsi,et al.  Interplay of PIWI/Argonaute protein MIWI and kinesin KIF17b in chromatoid bodies of male germ cells , 2006, Journal of Cell Science.

[65]  Y. Motorin,et al.  Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme. , 1999, RNA.