One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy
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Tom Ellis | Paul S. Freemont | Geoff S. Baldwin | Arturo Casini | James T. MacDonald | Georgia Christodoulou | P. Freemont | T. Ellis | J. T. MacDonald | Arturo Casini | G. Baldwin | Joachim De Jonghe | Joachim de Jonghe | Georgia Christodoulou
[1] Nathan J Hillson,et al. j5 DNA assembly design automation software. , 2012, ACS synthetic biology.
[2] Adam Arkin,et al. Setting the standard in synthetic biology , 2008, Nature Biotechnology.
[3] In Vitro Assembly of Multiple DNA Fragments Using Successive Hybridization , 2012, PloS one.
[4] S. Elledge,et al. SLIC: a method for sequence- and ligation-independent cloning. , 2012, Methods in molecular biology.
[5] Juhyun Kim,et al. The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes , 2012, Nucleic Acids Res..
[6] D. Endy. Foundations for engineering biology , 2005, Nature.
[7] J. Keith Joung,et al. TALENs: a widely applicable technology for targeted genome editing , 2012, Nature Reviews Molecular Cell Biology.
[8] G. Stephanopoulos,et al. Tuning genetic control through promoter engineering. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[9] Y Luo,et al. Minimum length of sequence homology required for in vivo cloning by homologous recombination in yeast. , 1997, Plasmid.
[10] Joe C. Liang,et al. A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity , 2012, Nucleic acids research.
[11] Christopher A. Voigt,et al. Automated design of synthetic ribosome binding sites to control protein expression , 2016 .
[12] Nicholas C Tang,et al. DNA synthesis, assembly and applications in synthetic biology. , 2012, Current opinion in chemical biology.
[13] J. SantaLucia,et al. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[14] D. Endy,et al. Refinement and standardization of synthetic biological parts and devices , 2008, Nature Biotechnology.
[15] Drew Endy,et al. Quantitative estimation of activity and quality for collections of functional genetic elements , 2013, Nature Methods.
[16] Carola Engler,et al. A One Pot, One Step, Precision Cloning Method with High Throughput Capability , 2008, PloS one.
[17] Alan Villalobos,et al. Design Parameters to Control Synthetic Gene Expression in Escherichia coli , 2009, PloS one.
[18] D. G. Gibson,et al. Enzymatic assembly of DNA molecules up to several hundred kilobases , 2009, Nature Methods.
[19] Robert H Schiestl,et al. Quick and easy yeast transformation using the LiAc/SS carrier DNA/PEG method , 2007, Nature Protocols.
[20] D. Hoover,et al. DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis. , 2002, Nucleic acids research.
[21] N. Metropolis,et al. Equation of State Calculations by Fast Computing Machines , 1953, Resonance.
[22] Jingdong Tian,et al. Circular Polymerase Extension Cloning of Complex Gene Libraries and Pathways , 2009, PloS one.
[23] Drew Endy,et al. A survey of enabling technologies in synthetic biology , 2013, Journal of biological engineering.
[24] Kevin Munnelly. Engineering for the 21st century: synthetic biology. , 2013, ACS synthetic biology.
[25] Barbara A Halkier,et al. USER cloning and USER fusion: the ideal cloning techniques for small and big laboratories. , 2010, Methods in molecular biology.
[26] Anthony G. Wedd,et al. Parallel In Vivo DNA Assembly by Recombination: Experimental Demonstration and Theoretical Approaches , 2013, PloS one.
[27] S. Ho,et al. Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. , 1989, Gene.
[28] Ilias Tagkopoulos,et al. Promoter element arising from the fusion of standard BioBrick parts. , 2013, ACS synthetic biology.
[29] A. Granell,et al. GoldenBraid: An Iterative Cloning System for Standardized Assembly of Reusable Genetic Modules , 2011, PloS one.
[30] J. Collins,et al. DIVERSITY-BASED, MODEL-GUIDED CONSTRUCTION OF SYNTHETIC GENE NETWORKS WITH PREDICTED FUNCTIONS , 2009, Nature Biotechnology.
[31] A. Stewart,et al. Techniques: Recombinogenic engineering--new options for cloning and manipulating DNA. , 2001, Trends in biochemical sciences.
[32] X. Chen,et al. Specific cloning of human DNA as yeast artificial chromosomes by transformation-associated recombination. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[33] Herbert M Sauro,et al. Designing and engineering evolutionary robust genetic circuits , 2010, Journal of biological engineering.
[34] Christopher A. Voigt,et al. Ribozyme-based insulator parts buffer synthetic circuits from genetic context , 2012, Nature Biotechnology.
[35] Matthias Heinemann,et al. Synthetic biology - putting engineering into biology , 2006, Bioinform..
[36] Qikai Xu,et al. Design of 240,000 orthogonal 25mer DNA barcode probes , 2009, Proceedings of the National Academy of Sciences.
[37] Adam P Arkin,et al. RNA processing enables predictable programming of gene expression , 2012, Nature Biotechnology.
[38] W. Edelmann,et al. SLiCE: a novel bacterial cell extract-based DNA cloning method , 2012, Nucleic acids research.
[39] Eran Segal,et al. Sequence features of yeast and human core promoters that are predictive of maximal promoter activity , 2013, Nucleic acids research.
[40] J. Ayala,et al. Regulation of transcription of cell division genes in the Escherichia coli dcw cluster , 1998, Cellular and Molecular Life Sciences CMLS.
[41] Joseph H. Davis,et al. Design, construction and characterization of a set of insulated bacterial promoters , 2010, Nucleic acids research.
[42] Mitsuhiro Itaya,et al. One step assembly of multiple DNA fragments with a designed order and orientation in Bacillus subtilis plasmid. , 2003, Nucleic acids research.
[43] I. Gibbons,et al. Expression and genomic analysis of midasin, a novel and highly conserved AAA protein distantly related to dynein , 2002, BMC Genomics.
[44] Drew Endy,et al. Precise and reliable gene expression via standard transcription and translation initiation elements , 2013, Nature Methods.
[45] Hal S. Alper,et al. Re-engineering multicloning sites for function and convenience , 2011, Nucleic acids research.
[46] James J. Collins,et al. Next-Generation Synthetic Gene Networks , 2009, Nature Biotechnology.
[47] H. Sauro,et al. Standard Biological Parts Knowledgebase , 2011, PloS one.
[48] Drew Endy,et al. Measuring the activity of BioBrick promoters using an in vivo reference standard , 2009, Journal of biological engineering.
[49] J Craig Venter,et al. One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome , 2008, Proceedings of the National Academy of Sciences.
[50] Jay D Keasling,et al. BglBricks: A flexible standard for biological part assembly , 2010, Journal of biological engineering.
[51] R. Sikorski,et al. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. , 1989, Genetics.
[52] Priscilla E. M. Purnick,et al. The second wave of synthetic biology: from modules to systems , 2009, Nature Reviews Molecular Cell Biology.
[53] E. Andrianantoandro,et al. Synthetic biology: new engineering rules for an emerging discipline , 2006, Molecular systems biology.
[54] Wei-Hua Chen,et al. The MASTER (methylation-assisted tailorable ends rational) ligation method for seamless DNA assembly , 2013, Nucleic acids research.
[55] George M Church. From systems biology to synthetic biology , 2005, Molecular systems biology.
[56] Zengyi Shao,et al. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways , 2008, Nucleic acids research.
[57] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[58] Tom Ellis,et al. DNA assembly for synthetic biology: from parts to pathways and beyond. , 2011, Integrative biology : quantitative biosciences from nano to macro.
[59] D. M. Brown,et al. An approach to random mutagenesis of DNA using mixtures of triphosphate derivatives of nucleoside analogues. , 1996, Journal of molecular biology.
[60] D. G. Gibson,et al. Enzymatic Assembly of Overlapping DNA Fragments , 2011, Methods in Enzymology.
[61] Christian L. Barrett,et al. Systems biology as a foundation for genome-scale synthetic biology. , 2006, Current opinion in biotechnology.
[62] Drew Endy,et al. Engineering BioBrick vectors from BioBrick parts , 2008, Journal of Biological Engineering.
[63] Matthew W. Lux,et al. Essential information for synthetic DNA sequences , 2011, Nature Biotechnology.
[64] Herbert M. Sauro,et al. In-Fusion BioBrick assembly and re-engineering , 2010, Nucleic acids research.
[65] Paul S. Freemont,et al. Computational design approaches and tools for synthetic biology. , 2011, Integrative biology : quantitative biosciences from nano to macro.