Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms

Gene duplication and alternative splicing are distinct evolutionary mechanisms that provide the raw material for new biological functions. We explored their relationships in human and mouse and found an inverse correlation between the size of a gene's family and its use of alternatively spliced isoforms. A cross-organism analysis suggests that selection for genome-wide genic proliferation might be interchangeably met by either evolutionary mechanism.

[1]  J. Castle,et al.  Genome-Wide Survey of Human Alternative Pre-mRNA Splicing with Exon Junction Microarrays , 2003, Science.

[2]  M. Lynch,et al.  The evolutionary fate and consequences of duplicate genes. , 2000, Science.

[3]  S. Blair Hedges,et al.  The origin and evolution of model organisms , 2002, Nature Reviews Genetics.

[4]  Peer Bork,et al.  Common exon duplication in animals and its role in alternative splicing. , 2002, Human molecular genetics.

[5]  Christopher J. Lee,et al.  Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss , 2003, Nature Genetics.

[6]  P. Bork,et al.  Alternative splicing and genome complexity , 2002, Nature Genetics.

[7]  A. Force,et al.  Preservation of duplicate genes by complementary, degenerative mutations. , 1999, Genetics.

[8]  Gil Ast,et al.  How did alternative splicing evolve? , 2004, Nature Reviews Genetics.

[9]  E V Koonin,et al.  Origin of alternative splicing by tandem exon duplication. , 2001, Human molecular genetics.

[10]  Wen-Hsiung Li,et al.  Divergence in the spatial pattern of gene expression between human duplicate genes. , 2003, Genome research.

[11]  J. Lister,et al.  Duplicate mitf genes in zebrafish: complementary expression and conservation of melanogenic potential. , 2001, Developmental biology.

[12]  Thangavel Alphonse Thanaraj,et al.  ASD: the Alternative Splicing Database , 2004, Nucleic Acids Res..

[13]  Dr. Susumu Ohno Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.

[14]  A. Hughes The evolution of functionally novel proteins after gene duplication , 1994, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[15]  Christian E. V. Storm,et al.  Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. , 2001, Journal of molecular biology.