Rapid Evaporative Ionisation Mass Spectrometry (REIMS) Provides Accurate Direct from Culture Species Identification within the Genus Candida

[1]  Z. Takáts,et al.  Automated High-Throughput Identification and Characterization of Clinically Important Bacteria and Fungi using Rapid Evaporative Ionization Mass Spectrometry. , 2016, Analytical chemistry.

[2]  A. Borman,et al.  Rapid identification of 6328 isolates of pathogenic yeasts using MALDI-ToF MS and a simplified, rapid extraction procedure that is compatible with the Bruker Biotyper platform and database. , 2015, Medical mycology.

[3]  E. Leoncini,et al.  Are the Conventional Commercial Yeast Identification Methods Still Helpful in the Era of New Clinical Microbiology Diagnostics? A Meta-Analysis of Their Accuracy , 2015, Journal of Clinical Microbiology.

[4]  Gianluigi Cardinali,et al.  International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database--the quality controlled standard tool for routine identification of human and animal pathogenic fungi. , 2015, Medical mycology.

[5]  David S. Wishart,et al.  MetaboAnalyst 3.0—making metabolomics more meaningful , 2015, Nucleic Acids Res..

[6]  D. Poulain Candida albicans, plasticity and pathogenesis , 2015, Critical reviews in microbiology.

[7]  Zoltan Takats,et al.  Characterization and identification of clinically relevant microorganisms using rapid evaporative ionization mass spectrometry. , 2014, Analytical chemistry.

[8]  T. Boekhout,et al.  Interlaboratory Comparison of Sample Preparation Methods, Database Expansions, and Cutoff Values for Identification of Yeasts by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Using a Yeast Test Panel , 2014, Journal of Clinical Microbiology.

[9]  Nicolas Papon,et al.  Emerging and Emerged Pathogenic Candida Species: Beyond the Candida albicans Paradigm , 2013, PLoS pathogens.

[10]  A. Darzi,et al.  Intraoperative Tissue Identification Using Rapid Evaporative Ionization Mass Spectrometry , 2013, Science Translational Medicine.

[11]  K. Veselkov,et al.  Analysis of intact bacteria using rapid evaporative ionisation mass spectrometry. , 2013, Chemical communications.

[12]  Brian J Stucky,et al.  SeqTrace: a graphical tool for rapidly processing DNA sequencing chromatograms. , 2012, Journal of biomolecular techniques : JBT.

[13]  Gilbert GREUB,et al.  Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology. , 2012, FEMS microbiology reviews.

[14]  M. Ghannoum,et al.  Lipidomics of Candida albicans biofilms reveals phase-dependent production of phospholipid molecular classes and role for lipid rafts in biofilm formation. , 2011, Microbiology.

[15]  Ronald N. Jones,et al.  Triazole and Echinocandin MIC Distributions with Epidemiological Cutoff Values for Differentiation of Wild-Type Strains from Non-Wild-Type Strains of Six Uncommon Species of Candida , 2011, Journal of Clinical Microbiology.

[16]  M. Kuhns,et al.  Improved clinical laboratory identification of human pathogenic yeasts by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. , 2011, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[17]  Steven D. Brown,et al.  Clinical breakpoints for the echinocandins and Candida revisited: integration of molecular, clinical, and microbiological data to arrive at species-specific interpretive criteria. , 2011, Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy.

[18]  Gaël Varoquaux,et al.  Scikit-learn: Machine Learning in Python , 2011, J. Mach. Learn. Res..

[19]  M. Pfaller,et al.  Wild-type MIC distributions, epidemiological cutoff values and species-specific clinical breakpoints for fluconazole and Candida: time for harmonization of CLSI and EUCAST broth microdilution methods. , 2010, Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy.

[20]  Ashutosh Kumar Singh,et al.  Phospholipidome of Candida: each species of Candida has distinctive phospholipid molecular species. , 2010, Omics : a journal of integrative biology.

[21]  P. Murray,et al.  Evaluation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Identification of Clinically Important Yeast Species , 2010, Journal of Clinical Microbiology.

[22]  M. Pfaller,et al.  Epidemiology of Invasive Candidiasis: a Persistent Public Health Problem , 2007, Clinical Microbiology Reviews.

[23]  S. Free,et al.  The structure and synthesis of the fungal cell wall , 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.

[24]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[25]  R. Murphy,et al.  Electrospray mass spectrometry of phospholipids. , 2003, Mass spectrometry reviews.

[26]  R. Somorjai,et al.  Rapid Identification of Candida Species by Using Nuclear Magnetic Resonance Spectroscopy and a Statistical Classification Strategy , 2003, Applied and Environmental Microbiology.

[27]  D. Sanglard,et al.  Resistance of Candida species to antifungal agents: molecular mechanisms and clinical consequences. , 2002, The Lancet. Infectious diseases.

[28]  H. Einsele,et al.  Phospholipid and sterol analysis of plasma membranes of azole-resistant Candida albicans strains. , 2000, FEMS microbiology letters.

[29]  J. Hoppe,et al.  Evaluation of Six Commercial Tests and the Germ-Tube Test for Presumptive Identification of Candida albicans , 1999, European Journal of Clinical Microbiology and Infectious Diseases.

[30]  M. Bard,et al.  Sequencing, Disruption, and Characterization of the Candida albicans Sterol Methyltransferase (ERG6) Gene: Drug Susceptibility Studies in erg6 Mutants , 1998, Antimicrobial Agents and Chemotherapy.

[31]  W. Lubitz,et al.  Classification and identification of bacteria: current approaches to an old problem. Overview of methods used in bacterial systematics. , 1996, Journal of biotechnology.

[32]  W. Jarvis Epidemiology of nosocomial fungal infections, with emphasis on Candida species. , 1995, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[33]  J. Griffiss,et al.  Investigation of the structural heterogeneity of lipooligosaccharides from pathogenic Haemophilus and Neisseria species and of R-type lipopolysaccharides from Salmonella typhimurium by electrospray mass spectrometry , 1993, Journal of bacteriology.

[34]  M. Ghannoum,et al.  Experimental evidence for the role of lipids in adherence of Candida spp. to human buccal epithelial cells , 1986, Infection and immunity.

[35]  K. Abel,et al.  CLASSIFICATION OF MICROORGANISMS BY ANALYSIS OF CHEMICAL COMPOSITION I , 1963, Journal of bacteriology.

[36]  S. Subramaniam,et al.  A comprehensive classification system for lipids 1 , 2005 .

[37]  L. Breiman Random Forests , 2001, Machine Learning.