Complete genome sequence of Meiothermus ruber type strain (21T)

Brian J Tindall, Johannes Sikorski, Susan Lucas, Eugene Goltsman, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Hope Tice, Jan-Fang Cheng, Cliff Han, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Regine Fähnrich, Lynne Goodwin, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, and Alla Lapidus

[1]  H. Freeze,et al.  Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile , 1969, Journal of bacteriology.

[2]  L. G. Loginova,et al.  [Thermus ruber obligate thermophilic bacteria in the thermal springs of Kamchatka]. , 1975, Mikrobiologiia.

[3]  P. Sneath,et al.  Approved lists of bacterial names. , 1980, The Medical journal of Australia.

[4]  L. G. Loginova,et al.  Thermus ruber sp. nov., nom. rev. , 1984 .

[5]  R. Anderson,et al.  Structure of a novel phosphoglycolipid from Deinococcus radiodurans. , 1985, The Journal of biological chemistry.

[6]  C. Woese,et al.  The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction. , 1989, Systematic and Applied Microbiology.

[7]  O. Kandler,et al.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[8]  M. Donato,et al.  Polar Lipid and Fatty Acid Composition of Strains of Thermus ruber , 1991 .

[9]  Pha Sneath,et al.  International code of nomenclature of bacteria (1990 revision). , 1992 .

[10]  M. D. da Costa,et al.  Thermus silvanus sp. nov. and Thermus chliarophilus sp. nov., two new species related to thermus ruber but with lower growth temperatures. , 1995, International journal of systematic bacteriology.

[11]  J. Euzéby List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet. , 1997, International journal of systematic bacteriology.

[12]  F. Rainey,et al.  Meiothermus cerbereus sp. nov., a new slightly thermophilic species with high levels of 3-hydroxy fatty acids. , 1997, International journal of systematic bacteriology.

[13]  E. Stackebrandt,et al.  Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison. , 1997, International journal of systematic bacteriology.

[14]  M. D. da Costa,et al.  Characterization of glycolipids from Meiothermus spp. , 1999, Microbiology.

[15]  Burgess,et al.  Carotenoid glycoside esters from the thermophilic bacterium meiothermusruber , 1999, Journal of natural products.

[16]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[17]  Wei Qian,et al.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.

[18]  Christopher J. Lee,et al.  Multiple sequence alignment using partial order graphs , 2002, Bioinform..

[19]  Guang-Huey Lin,et al.  Meiothermus taiwanensis sp. nov., a novel filamentous, thermophilic species isolated in Taiwan. , 2002, International journal of systematic and evolutionary microbiology.

[20]  Lianbing Lin,et al.  Meiothermus rosaceus sp nov isolated from Tengchong hot spring in Yunnan, China. , 2002, FEMS microbiology letters.

[21]  Validation list no. 84. Validation of publication of new names and new combinations previously effectively published outside the IJSEM. , 2002, International journal of systematic and evolutionary microbiology.

[22]  Nuno Empadinhas,et al.  Meiothermus timidus sp. nov., a new slightly thermophilic yellow-pigmented species. , 2005, FEMS microbiology letters.

[23]  Shih-Hsiung Wu,et al.  Structural elucidation of phosphoglycolipids from strains of the bacterial thermophiles Thermus and Meiothermus Published, JLR Papers in Press, May 4, 2006. , 2006, Journal of Lipid Research.

[24]  J. Chun,et al.  EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. , 2007, International journal of systematic and evolutionary microbiology.

[25]  G. Garrity,et al.  Taxonomic Outline of the Bacteria and Archaea , Release 7 . 7 March 6 , 2007 . Part 4 – The Bacteria : Phylum “ Proteobacteria ” , Class Betaproteobacteria , 2007 .

[26]  K. Schleifer,et al.  The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. , 2008, Systematic and applied microbiology.

[27]  J. Rougemont,et al.  A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.

[28]  W. BROOKST,et al.  Nomenclature for “ Micrococcus radiodurans ” and Other Radiation-Resistant Cocci : Deinococcaceae fam . nov . and Deinococcus gen . nov . , Including Five Species , 2008 .

[29]  Chris F. Taylor,et al.  The minimum information about a genome sequence (MIGS) specification , 2008, Nature Biotechnology.

[30]  Jun Ishikawa,et al.  An Alternative Menaquinone Biosynthetic Pathway Operating in Microorganisms , 2008, Science.

[31]  I-Min A. Chen,et al.  IMG ER: a system for microbial genome annotation expert review and curation , 2009, Bioinform..

[32]  Natalia N. Ivanova,et al.  A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea , 2009, Nature.

[33]  M. D. da Costa,et al.  Meiothermus rufus sp. nov., a new slightly thermophilic red-pigmented species and emended description of the genus Meiothermus. , 2009, Systematic and applied microbiology.

[34]  H. Klenk,et al.  En route to a genome-based classification of Archaea and Bacteria? , 2010, Systematic and applied microbiology.

[35]  Xue-Wei Xu,et al.  Meiothermus cateniformans sp. nov., a slightly thermophilic species from north-eastern China. , 2010, International journal of systematic and evolutionary microbiology.

[36]  Alexandros Stamatakis,et al.  How Many Bootstrap Replicates Are Necessary? , 2009, RECOMB.

[37]  I-Min A. Chen,et al.  The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..