Energy Preserved Sampling for Compressed Sensing MRI

The sampling patterns, cost functions, and reconstruction algorithms play important roles in optimizing compressed sensing magnetic resonance imaging (CS-MRI). Simple random sampling patterns did not take into account the energy distribution in k-space and resulted in suboptimal reconstruction of MR images. Therefore, a variety of variable density (VD) based samplings patterns had been developed. To further improve it, we propose a novel energy preserving sampling (ePRESS) method. Besides, we improve the cost function by introducing phase correction and region of support matrix, and we propose iterative thresholding algorithm (ITA) to solve the improved cost function. We evaluate the proposed ePRESS sampling method, improved cost function, and ITA reconstruction algorithm by 2D digital phantom and 2D in vivo MR brains of healthy volunteers. These assessments demonstrate that the proposed ePRESS method performs better than VD, POWER, and BKO; the improved cost function can achieve better reconstruction quality than conventional cost function; and the ITA is faster than SISTA and is competitive with FISTA in terms of computation time.

[1]  Andre van Schaik,et al.  A comparison between compressed sensing algorithms in Electrical Impedance Tomography , 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.

[2]  Junzhou Huang,et al.  Compressive Sensing MRI with Wavelet Tree Sparsity , 2012, NIPS.

[3]  Emmanuel J. Candès,et al.  NESTA: A Fast and Accurate First-Order Method for Sparse Recovery , 2009, SIAM J. Imaging Sci..

[4]  Albert Macovski,et al.  MRI: A charmed past and an exciting future , 2009, Journal of magnetic resonance imaging : JMRI.

[5]  M. Hutchinson,et al.  Fast MRI data acquisition using multiple detectors , 1988, Magnetic resonance in medicine.

[6]  Yudong Zhang,et al.  An MR Brain Images Classifier System via Particle Swarm Optimization and Kernel Support Vector Machine , 2013, TheScientificWorldJournal.

[7]  Simon Litsyn,et al.  Convergence analysis of generalized serial message-passing schedules , 2009, IEEE Journal on Selected Areas in Communications.

[8]  Michael P. Friedlander,et al.  Sparse Optimization with Least-Squares Constraints , 2011, SIAM J. Optim..

[9]  D. Donoho,et al.  Sparse MRI: The application of compressed sensing for rapid MR imaging , 2007, Magnetic resonance in medicine.

[10]  Pericle Zanchetta,et al.  Hybrid Bacterial Foraging Optimization Strategy for Automated Experimental Control Design in Electrical Drives , 2013, IEEE Transactions on Industrial Informatics.

[11]  J. Hogg Magnetic resonance imaging. , 1994, Journal of the Royal Naval Medical Service.

[12]  Andrea Montanari,et al.  Message-passing algorithms for compressed sensing , 2009, Proceedings of the National Academy of Sciences.

[13]  M. Lustig,et al.  Compressed Sensing MRI , 2008, IEEE Signal Processing Magazine.

[14]  Michael Elad,et al.  Stable recovery of sparse overcomplete representations in the presence of noise , 2006, IEEE Transactions on Information Theory.

[15]  Justin Romberg,et al.  Practical Signal Recovery from Random Projections , 2005 .

[16]  Klaas Paul Pruessmann,et al.  A Fast Wavelet-Based Reconstruction Method for Magnetic Resonance Imaging , 2011, IEEE Transactions on Medical Imaging.

[17]  Junzhou Huang,et al.  The benefit of tree sparsity in accelerated MRI , 2014, Medical Image Anal..

[18]  I. Daubechies,et al.  An iterative thresholding algorithm for linear inverse problems with a sparsity constraint , 2003, math/0307152.

[19]  Marc Teboulle,et al.  A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems , 2009, SIAM J. Imaging Sci..

[20]  Junfeng Yang,et al.  A Fast Alternating Direction Method for TVL1-L2 Signal Reconstruction From Partial Fourier Data , 2010, IEEE Journal of Selected Topics in Signal Processing.

[21]  Rudolf Stollberger,et al.  Adapted random sampling patterns for accelerated MRI , 2011, Magnetic Resonance Materials in Physics, Biology and Medicine.

[22]  Ivan W. Selesnick,et al.  A Subband Adaptive Iterative Shrinkage/Thresholding Algorithm , 2010, IEEE Transactions on Signal Processing.

[23]  Jingfei Ma,et al.  A fast spin echo two-point Dixon technique and its combination with sensitivity encoding for efficient T2-weighted imaging. , 2005, Magnetic resonance imaging.

[24]  Michael A. Saunders,et al.  Atomic Decomposition by Basis Pursuit , 1998, SIAM J. Sci. Comput..

[25]  Lawrence Carin,et al.  Exploiting Structure in Wavelet-Based Bayesian Compressive Sensing , 2009, IEEE Transactions on Signal Processing.

[26]  José M. Bioucas-Dias,et al.  A fast algorithm for the constrained formulation of compressive image reconstruction and other linear inverse problems , 2009, 2010 IEEE International Conference on Acoustics, Speech and Signal Processing.

[27]  P. Mansfield Multi-planar image formation using NMR spin echoes , 1977 .

[28]  K. Scheffler A pictorial description of steady-states in rapid magnetic resonance imaging , 1999 .

[29]  Yudong Zhang,et al.  AN MR BRAIN IMAGES CLASSIFIER VIA PRINCIPAL COMPONENT ANALYSIS AND KERNEL SUPPORT , 2012 .

[30]  Shrikanth S. Narayanan,et al.  Accelerated three‐dimensional upper airway MRI using compressed sensing , 2009, Magnetic resonance in medicine.

[31]  Yudong Zhang,et al.  A Two-Level Iterative Reconstruction Method for Compressed Sensing MRI , 2011 .

[32]  Itsik Bergel,et al.  Convergence Analysis of Downstream VDSL Adaptive Multichannel Partial FEXT Cancellation , 2010, IEEE Transactions on Communications.

[33]  Yudong Zhang,et al.  A Support-Based Reconstruction for SENSE MRI , 2013, Sensors.

[34]  S. Einav,et al.  A decoupled coil detector array for fast image acquisition in magnetic resonance imaging. , 1991, Medical physics.

[35]  Bernhard Schölkopf,et al.  Optimization of k‐space trajectories for compressed sensing by Bayesian experimental design , 2010, Magnetic resonance in medicine.

[36]  Michael Weiner,et al.  Accurate template-based correction of brain MRI intensity distortion with application to dementia and aging , 2004, IEEE Transactions on Medical Imaging.

[37]  Daniel K. Sodickson,et al.  Recent advances in image reconstruction, coil sensitivity calibration, and coil array design for SMASH and generalized parallel MRI , 2001, Magnetic Resonance Materials in Physics, Biology and Medicine.

[38]  David L. Donoho,et al.  Observed universality of phase transitions in high-dimensional geometry, with implications for modern data analysis and signal processing , 2009, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.