Intensity-based analysis of dual-color gene expression data as an alternative to ratio-based analysis to enhance reproducibility

[1]  C. Kruse,et al.  Analysis of Gene Expression in Parkinson's Disease: Possible Involvement of Neurotrophic Support and Axon Guidance in Dopaminergic Cell Death , 2009, Brain pathology.

[2]  Sjoerd J. Vosse,et al.  Across array comparative genomic hybridization: A strategy to reduce reference channel hybridizations , 2008, Genes, chromosomes & cancer.

[3]  J. Davis Bioinformatics and Computational Biology Solutions Using R and Bioconductor , 2007 .

[4]  P. Collins,et al.  Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project , 2006, Nature Biotechnology.

[5]  A. Stromberg,et al.  Harnessing the power of gene microarrays for the study of brain aging and Alzheimer's disease: Statistical reliability and functional correlation , 2005, Ageing Research Reviews.

[6]  J. D. den Dunnen,et al.  Intensity-based analysis of two-colour microarrays enables efficient and flexible hybridization designs. , 2004, Nucleic acids research.

[7]  W. Markesbery,et al.  Incipient Alzheimer's disease: Microarray correlation analyses reveal major transcriptional and tumor suppressor responses , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[8]  Terry Speed,et al.  Normalization of cDNA microarray data. , 2003, Methods.

[9]  Eric R. Ziegel,et al.  The Elements of Statistical Learning , 2003, Technometrics.

[10]  Terence P. Speed,et al.  A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..

[11]  G. Churchill,et al.  Experimental design for gene expression microarrays. , 2001, Biostatistics.

[12]  Scott A. Rifkin,et al.  Microarray analysis of Drosophila development during metamorphosis. , 1999, Science.

[13]  G. Schwarz Estimating the Dimension of a Model , 1978 .

[14]  Gordon K. Smyth,et al.  limma: Linear Models for Microarray Data , 2005 .

[15]  Rafael A. Irizarry,et al.  Bioinformatics and Computational Biology Solutions using R and Bioconductor , 2005 .

[16]  H. Braak,et al.  Neuropathological stageing of Alzheimer-related changes , 2004, Acta Neuropathologica.

[17]  Pierre R. Bushel,et al.  Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models , 2001, J. Comput. Biol..