Structure and Function of the Transcription Elongation Factor GreB Bound to Bacterial RNA Polymerase
暂无分享,去创建一个
William J. Rice | Willy Wriggers | Pablo Chacon | Seth A. Darst | P. Chacón | W. Wriggers | W. Rice | S. Darst | N. Opalka | Natacha Opalka | Mark Chlenov | M. Chlenov
[1] S. Darst,et al. Crystal structure of the GreA transcript cleavage factor from Escherichia coli , 1995, Nature.
[2] D. Bushnell,et al. Structural Basis of Transcription Nucleotide Selection by Rotation in the RNA Polymerase II Active Center , 2004, Cell.
[3] P. Ghanouni,et al. The RNA polymerase II elongation complex. Factor-dependent transcription elongation involves nascent RNA cleavage. , 1992, The Journal of biological chemistry.
[4] T. Richmond,et al. Crystal structure of a yeast TFIIA/TBP/DNA complex , 1996, Nature.
[5] S. Darst,et al. Visualization of the binding site for the transcript cleavage factor GreB on Escherichia coli RNA polymerase. , 1998, Journal of molecular biology.
[6] C. Chan,et al. GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure. , 1994, The Journal of biological chemistry.
[7] C. Gross,et al. The functional and regulatory roles of sigma factors in transcription. , 1998, Cold Spring Harbor symposia on quantitative biology.
[8] E. Nudler,et al. The RNA–DNA Hybrid Maintains the Register of Transcription by Preventing Backtracking of RNA Polymerase , 1997, Cell.
[9] K. Murakami,et al. Structural Basis of Transcription Initiation: RNA Polymerase Holoenzyme at 4 Å Resolution , 2002, Science.
[10] S K Burley,et al. Crystal structure of the C-terminal domain of the RAP74 subunit of human transcription factor IIF , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[11] 윤호주. 전사인자(transcription factor)와 기관지천식 , 1999 .
[12] J. Archambault,et al. Genetic interaction between transcription elongation factor TFIIS and RNA polymerase II , 1992, Molecular and cellular biology.
[13] R. Mercer. Structure of the Na,K-ATPase. , 1993, International Review of Cytology.
[14] S. Burley,et al. Crystal structure of a TFIIB–TBP–TATA-element ternary complex , 1995, Nature.
[15] Arkady Mustaev,et al. Structural Mechanism for Rifampicin Inhibition of Bacterial RNA Polymerase , 2001, Cell.
[16] M. Kashlev,et al. RNA Polymerase Switches between Inactivated and Activated States By Translocating Back and Forth along the DNA and the RNA* , 1997, The Journal of Biological Chemistry.
[17] T. Kubo,et al. Structure-Function Relationship of Yeast S-II in Terms of Stimulation of RNA Polymerase II, Arrest Relief, and Suppression of 6-Azauracil Sensitivity (*) , 1995, The Journal of Biological Chemistry.
[18] D. Luse,et al. The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'----5' direction in the presence of elongation factor SII. , 1992, Genes & development.
[19] P. Cramer,et al. Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3 Å Resolution , 2001, Science.
[20] A. Das,et al. Intrinsic transcript cleavage activity of RNA polymerase. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[21] M. Weiss,et al. Structure of a new nucleic-acid-binding motif in eukaryotic transcriptional elongation factor TFIIS , 1993, Nature.
[22] D. DeRosier,et al. Averaging data derived from images of helical structures with different symmetries. , 1999, Journal of molecular biology.
[23] P. Cramer,et al. Structural Basis of Transcription: RNA Polymerase II at 2.8 Ångstrom Resolution , 2001, Science.
[24] K. Severinov,et al. Mapping of trypsin cleavage and antibody-binding sites and delineation of a dispensable domain in the beta subunit of Escherichia coli RNA polymerase. , 1991, The Journal of biological chemistry.
[25] R. Young,et al. RNA polymerase II. , 1991, Annual review of biochemistry.
[26] S. Darst,et al. Crystal Structure of a σ70 Subunit Fragment from E. coli RNA Polymerase , 1996, Cell.
[27] P. Cramer,et al. Architecture of the RNA Polymerase II-TFIIS Complex and Implications for mRNA Cleavage , 2003, Cell.
[28] S. Darst,et al. Mapping Interactions of Escherichia coli GreB with RNA Polymerase and Ternary Elongation Complexes* , 1999, The Journal of Biological Chemistry.
[29] J. Roberts,et al. Function of transcription cleavage factors GreA and GreB at a regulatory pause site. , 2000, Molecular cell.
[30] Patrick Cramer,et al. Multisubunit RNA polymerases. , 2002, Current opinion in structural biology.
[31] K. Severinov,et al. Crystal Structure of Thermus aquaticus Core RNA Polymerase at 3.3 Å Resolution , 1999, Cell.
[32] M. Chamberlin,et al. Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[33] S. Darst,et al. Structure of the Bacterial RNA Polymerase Promoter Specificity σ Subunit , 2002 .
[34] V. Armstrong,et al. Mechanistic studies on deoxyribonucleic acid dependent ribonucleic acid polymerase from Escherichia coli using phosphorothioate analogues. 1. Initiation and pyrophosphate exchange reactions. , 1979, Biochemistry.
[35] S. Orlicky,et al. Transcription Elongation through DNA Arrest Sites , 1997, The Journal of Biological Chemistry.
[36] S. Borukhov,et al. Mapping of a contact for the RNA 3' terminus in the largest subunit of RNA polymerase. , 1991, The Journal of biological chemistry.
[37] Willy Wriggers,et al. Conformational flexibility of bacterial RNA polymerase , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[38] A. Sali,et al. Domain Organization of Escherichia coli Transcript Cleavage Factors GreA and GreB* , 1997, The Journal of Biological Chemistry.
[39] K. Severinov,et al. A non-essential domain of Escherichia coli RNA polymerase required for the action of the termination factor Alc. , 1994, The Journal of biological chemistry.
[40] Asis Das,et al. GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming , 2000, The EMBO journal.
[41] P. V. von Hippel,et al. Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription. , 1993, Science.
[42] M. Chamberlin,et al. Transcription elongation factor SII (TFIIS) enables RNA polymerase II to elongate through a block to transcription in a human gene in vitro. , 1989, The Journal of biological chemistry.
[43] W. Mangel,et al. RNA polymerase , 2020, Nature.
[44] D. Reines. Elongation factor-dependent transcript shortening by template-engaged RNA polymerase II. , 1992, The Journal of biological chemistry.
[45] A. Ueno,et al. Stimulation of transcript elongation requires both the zinc finger and RNA polymerase II binding domains of human TFIIS. , 1991, Biochemistry.
[46] R. Ebright. RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II. , 2000, Journal of molecular biology.
[47] A. Sluder,et al. Properties of a Drosophila RNA polymerase II elongation factor. , 1989, The Journal of biological chemistry.
[48] C. Kane,et al. Alanine-scanning mutagenesis of human transcript elongation factor TFIIS. , 1995, Biochemistry.
[49] C. Arrowsmith,et al. Yeast Transcript Elongation Factor (TFIIS), Structure and Function , 1998, The Journal of Biological Chemistry.
[50] M. Kashlev,et al. Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[51] C. Arrowsmith,et al. Elongation factor TFIIS contains three structural domains: solution structure of domain II. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[52] S. Borukhov,et al. GreA protein: a transcription elongation factor from Escherichia coli. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[53] V. Markovtsov,et al. Swing-gate model of nucleotide entry into the RNA polymerase active center. , 2002, Molecular cell.
[54] S. Borukhov,et al. Distinct functions of N and C-terminal domains of GreA, an Escherichia coli transcript cleavage factor. , 1998, Journal of molecular biology.
[55] Grant J. Jensen,et al. Yeast RNA Polymerase II at 5 Å Resolution , 1999, Cell.
[56] Arkady Mustaev,et al. Unified two‐metal mechanism of RNA synthesis and degradation by RNA polymerase , 2003, The EMBO journal.
[57] S. Darst,et al. The Functional Role of Basic Patch, a Structural Element ofEscherichia coli Transcript Cleavage Factors GreA and GreB* , 2000, The Journal of Biological Chemistry.
[58] D. Erie,et al. Transcript Cleavage by Thermus thermophilus RNA Polymerase , 2002, The Journal of Biological Chemistry.
[59] J. Archambault,et al. In vitro characterization of mutant yeast RNA polymerase II with reduced binding for elongation factor TFIIS. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[60] R. Kornberg,et al. Eukaryotic transcriptional control. , 1999, Trends in cell biology.
[61] S. Borukhov,et al. Purification and assay of Escherichia coli transcript cleavage factors GreA and GreB. , 1996, Methods in enzymology.
[62] R. Ebright,et al. Bacterial RNA polymerase subunit omega and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[63] D. Stokes,et al. Structure of Na+,K+-ATPase at 11-A resolution: comparison with Ca2+-ATPase in E1 and E2 states. , 2001, Biophysical journal.
[64] M. Chamberlin,et al. Spontaneous cleavage of RNA in ternary complexes of Escherichia coli RNA polymerase and its significance for the mechanism of transcription. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[65] S. Darst,et al. Three-dimensional structure of E. coil core RNA polymerase: Promoter binding and elongation conformations of the enzyme , 1995, Cell.
[66] S. Borukhov,et al. Transcript cleavage factors from E. coli , 1993, Cell.
[67] W. Wooster,et al. Crystal structure of , 2005 .
[68] K. Severinov,et al. Direct localization of a beta-subunit domain on the three-dimensional structure of Escherichia coli RNA polymerase. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[69] S. Darst,et al. Structure of the Escherichia coli RNA Polymerase α Subunit Amino-Terminal Domain , 1998 .
[70] S. Darst,et al. A Structural Model of Transcription Elongation , 2000 .
[71] M. Chamberlin,et al. Basic mechanisms of transcript elongation and its regulation. , 1997, Annual review of biochemistry.
[72] C. Arrowsmith,et al. Yeast Transcript Elongation Factor (TFIIS), Structure and Function , 1998, The Journal of Biological Chemistry.
[73] R. Ebright,et al. Transcription activation by catabolite activator protein (CAP). , 1999, Journal of molecular biology.
[74] W Wriggers,et al. Modeling tricks and fitting techniques for multiresolution structures. , 2001, Structure.
[75] V. Markovtsov,et al. Modular organization of the catalytic center of RNA polymerase. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[76] D. K. Hawley,et al. Identification of a 3'-->5' exonuclease activity associated with human RNA polymerase II. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[77] K. Agarwal,et al. The transcription factor TFIIS zinc ribbon dipeptide Asp-Glu is critical for stimulation of elongation and RNA cleavage by RNA polymerase II. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[78] S. Yokoyama,et al. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution , 2002, Nature.
[79] M. Rudd,et al. The active site of RNA polymerase II participates in transcript cleavage within arrested ternary complexes. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[80] E. Geiduschek,et al. Crystal structure of a transcription factor IIIB core interface ternary complex , 2003, Nature.
[81] C. Kane,et al. Promoting elongation with transcript cleavage stimulatory factors. , 2002, Biochimica et biophysica acta.
[82] S. Darst,et al. Bacterial RNA polymerase. , 2001, Current opinion in structural biology.
[83] V. Markovtsov,et al. Protein-RNA interactions in the active center of transcription elongation complex. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[84] D. K. Hawley,et al. Promoter Proximal Sequences Modulate RNA Polymerase II Elongation by a Novel Mechanism , 1996, Cell.
[85] A. Hoffmann,et al. Crystal structure of TFIID TATA-box binding protein , 1992, Nature.