Mutation rate plasticity in rifampicin resistance depends on Escherichia coli cell–cell interactions
暂无分享,去创建一个
Roman V. Belavkin | Alastair Channon | Elizabeth Aston | Christopher G. Knight | John A. D. Aston | Rok Krašovec | Sarah Forbes | J. Aston | A. Channon | C. Knight | Bharat Rash | R. Belavkin | Manikandan Kadirvel | Elizabeth Aston | Bharat M. Rash | S. Forbes | R. Krašovec | M. Kadirvel
[1] R. MacLean,et al. Evaluating evolutionary models of stress-induced mutagenesis in bacteria , 2013, Nature Reviews Genetics.
[2] Philip J. Farabaugh,et al. Molecular basis of base substitution hotspots in Escherichia coli , 1978, Nature.
[3] Mitchel van Loon,et al. Mixed effects models , 2013 .
[4] D. Cox,et al. An Analysis of Transformations , 1964 .
[5] Analysis of the Luria-Delbrück distribution using discrete convolution powers , 1992 .
[6] M. Surette,et al. Quorum sensing in Escherichia coli and Salmonella typhimurium. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[7] Jeffrey E. Barrick,et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli , 2009, Nature.
[8] Jeffrey H. Miller,et al. Polymerases Leave Fingerprints: Analysis of the Mutational Spectrum in Escherichia coli rpoB To Assess the Role of Polymerase IV in Spontaneous Mutation , 2004, Journal of bacteriology.
[9] K. Winzer,et al. Quantitative liquid chromatography-tandem mass spectrometry profiling of activated methyl cycle metabolites involved in LuxS-dependent quorum sensing in Escherichia coli. , 2010, Analytical biochemistry.
[10] P. Foster,et al. Methods for determining spontaneous mutation rates. , 2006, Methods in enzymology.
[11] M. Winkler,et al. Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells , 1996, Journal of bacteriology.
[12] Sally Freeman,et al. Synthesis and bioluminescence-inducing properties of autoinducer (S)-4,5-dihydroxypentane-2,3-dione and its enantiomer. , 2010, Bioorganic & medicinal chemistry letters.
[13] Ivan Matic,et al. Causes and Consequences of DNA Repair Activity Modulation During Stationary Phase in Escherichia coli , 2007, Critical reviews in biochemistry and molecular biology.
[14] A. Agrawal,et al. Evidence for elevated mutation rates in low-quality genotypes , 2012, Proceedings of the National Academy of Sciences.
[15] B. Wanner,et al. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[16] J. Drake,et al. Rates of spontaneous mutation. , 1998, Genetics.
[17] Chang-Xing Ma,et al. Fluctuation AnaLysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbrück fluctuation analysis , 2009, Bioinform..
[18] A. Clatworthy,et al. Targeting virulence: a new paradigm for antimicrobial therapy , 2007, Nature Chemical Biology.
[19] Zbigniew Michalewicz,et al. Parameter Control in Evolutionary Algorithms , 2007, Parameter Setting in Evolutionary Algorithms.
[20] R. Kaplan. Evolutionary adjustment of spontaneous mutation rates , 2004, Humangenetik.
[21] S. Lederberg,et al. Methylated Bases in the Host-Modified Deoxyribonucleic Acid of Escherichia coli and Bacteriophage λ , 1966, Journal of bacteriology.
[22] Panos M. Pardalos,et al. Springer Proceedings in Mathematics & Statistics , 2013 .
[23] J. Bayona,et al. Multidrug-resistant and extensively drug-resistant tuberculosis: a threat to global control of tuberculosis , 2010, The Lancet.
[24] A. Agrawal,et al. Genetic loads under fitness‐dependent mutation rates , 2002 .
[25] S. Rosenberg,et al. Mutation as a Stress Response and the Regulation of Evolvability , 2007, Critical reviews in biochemistry and molecular biology.
[26] B. Bassler,et al. Regulation of Uptake and Processing of the Quorum-Sensing Autoinducer AI-2 in Escherichia coli , 2005, Journal of bacteriology.
[27] P. Foster,et al. Determining mutation rates in bacterial populations. , 2000, Methods.
[28] H. A. Orr,et al. Fitness and its role in evolutionary genetics , 2009, Nature Reviews Genetics.
[29] Alan Hodgkinson,et al. Variation in the mutation rate across mammalian genomes , 2011, Nature Reviews Genetics.
[30] Lilach Hadany,et al. THE EVOLUTION OF STRESS‐INDUCED HYPERMUTATION IN ASEXUAL POPULATIONS , 2012, Evolution; international journal of organic evolution.
[31] G. Hommel. A stagewise rejective multiple test procedure based on a modified Bonferroni test , 1988 .
[32] F. Taddei,et al. Highly variable mutation rates in commensal and pathogenic Escherichia coli. , 1997, Science.
[33] F. M. Stewart. Fluctuation tests: how reliable are the estimates of mutation rates? , 1994, Genetics.
[34] R. Lenski,et al. Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations , 1991, The American Naturalist.
[35] E. Rocha,et al. Natural Genome Diversity of AI-2 Quorum Sensing in Escherichia coli: Conserved Signal Production but Labile Signal Reception , 2012, Genome biology and evolution.
[36] Valeria Souza,et al. Stress-Induced Mutagenesis in Bacteria , 2003, Science.
[37] D. Bates,et al. Mixed-Effects Models in S and S-PLUS , 2001 .
[38] S. Gillespie,et al. A Practical Guide to Measuring Mutation Rates in Antibiotic Resistance , 2008, Antimicrobial Agents and Chemotherapy.
[39] Andrew W. Murray,et al. Estimating the Per-Base-Pair Mutation Rate in the Yeast Saccharomyces cerevisiae , 2008, Genetics.
[40] A. Sturtevant. Essays on Evolution. I. On the Effects of Selection on Mutation Rate , 1937, The Quarterly Review of Biology.
[41] E. Boedeker,et al. The possible influence of LuxS in the in vivo virulence of rabbit enteropathogenic Escherichia coli. , 2007, Veterinary microbiology.
[42] Michael Herrmann,et al. Advances in Artificial Life, ECAL 2011 , 2011 .
[43] Thomas Egli,et al. Specific growth rate and not cell density controls the general stress response in Escherichia coli. , 2004, Microbiology.
[44] R. Lenski,et al. The population genetics of ecological specialization in evolving Escherichia coli populations , 2000, Nature.
[45] Haixu Tang,et al. Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing , 2012, Proceedings of the National Academy of Sciences.
[46] Lurias,et al. MUTATIONS OF BACTERIA FROM VIRUS SENSITIVITY TO VIRUS RESISTANCE’-’ , 2003 .
[47] Kathleen Marchal,et al. COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia , 2013, Nucleic Acids Res..
[48] K. Xavier,et al. AI-2-mediated signalling in bacteria. , 2013, FEMS microbiology reviews.
[49] Thomas G. Doak,et al. Drift-barrier hypothesis and mutation-rate evolution , 2012, Proceedings of the National Academy of Sciences.
[50] P. Modrich,et al. Recognition sequence of the dam methylase of Escherichia coli K12 and mode of cleavage of Dpn I endonuclease. , 1979, The Journal of biological chemistry.
[51] R. MacLean,et al. The Fitness Cost of Rifampicin Resistance in Pseudomonas aeruginosa Depends on Demand for RNA Polymerase , 2011, Genetics.
[52] Tom Lenaerts,et al. Advances in Artificial Life, ECAL 2011: Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems , 2011 .
[53] Marcelo P. Sircili,et al. AI-3 Synthesis Is Not Dependent on luxS in Escherichia coli , 2006, Journal of bacteriology.
[54] Hilla Peretz,et al. Ju n 20 03 Schrödinger ’ s Cat : The rules of engagement , 2003 .
[55] S. Sarkar,et al. On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants , 2004, Genetica.