Effects of the Expressions and Variants of the CAST Gene on the Fatty Acid Composition of the Longissimus Thoracis Muscle of Grazing Sonid Sheep

Simple Summary This study aimed to evaluate the relationship between the expression levels of the CAST gene and the fatty acid (FA) composition in the longissimus thoracis (LL) muscle and to identify novel variants of CAST and perform association analysis with the FA composition in grazing Sonid sheep. The correlation results showed that high expression levels of CAST are correlated with better FA compositions and classes in LL. Four c.646G>C (G216R), c.1210C>T (R404C), c.1437G>A (479T), and c.2097C>T (699G) mutations were identified in the CAST gene of Sonid sheep. The association studies showed that c.1210C>T is associated with C14:0, C18:0, C18:1n9c, C18:3n3, n3, C12:0, n6, and n6/n3; c.646G>C and c.1437G>A in linkage disequilibrium-Mongolia (r2 = 0.964) were associated with C14:0, C18:0, SFA, C18:1n9c, n3, C10:0, C18:1n9t, and n6/n3; and c.2097C>T was associated with C18:3n3, n3, C10:0, and n6/n3 in the LL of Sonid sheep. Thus, the correlation results and associated mutations were expected to be genetic selection markers for the FA composition and meat quality of Sonid sheep muscle and provide new insight into sheep meat quality traits influenced by the ovine CAST gene. Abstract Fatty acid (FA) composition has an important impact on the nutrition and flavor of meat, and on consumer health, and is receiving more attention in the sheep industry. This study aimed to evaluate the relationship between the expression levels of the CAST gene and the FA composition in the longissimus thoracis (LL) muscle, to identify novel variants of CAST, and to perform association analysis with the FA composition in grazing Sonid lambs. The correlation results showed that high expression levels of CAST are correlated with better FA compositions and classes in LL. For association studies, the results showed that c.1210C>T and c.1437G>A in LD-M, and c.2097C>T mutations are associated with some compositions and classes of FA in the LL of grazing Sonid sheep. Two missense c.646G>C (G216R) and c.1210C>T (R404C) mutations were predicted to influence the Calpain_inhib domains of CAST. Thus, the correlation results and associated mutations are expected to be genetic selection markers for the FA composition and meat quality of grazing Sonid lamb muscle and provide new insights into sheep meat quality traits influenced by the ovine CAST gene.

[1]  N. Schreurs,et al.  Association of variants in FABP4, FASN, SCD, SREBP1 and TCAP genes with intramuscular fat, carcass traits and body size in Chinese Qinchuan cattle. , 2022, Meat science.

[2]  D. Hassabis,et al.  AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models , 2021, Nucleic Acids Res..

[3]  Jakaria,et al.  Hepatic transcriptome analysis identifies genes, polymorphisms and pathways involved in the fatty acids metabolism in sheep , 2021, PloS one.

[4]  L. Butler,et al.  Tumour fatty acid metabolism in the context of therapy resistance and obesity , 2021, Nature Reviews Cancer.

[5]  Oriol Vinyals,et al.  Highly accurate protein structure prediction with AlphaFold , 2021, Nature.

[6]  Uğur Zülkadir,et al.  Association between polymorphisms of Myf5, MSTN and CAST genes and fattening performance in Brown Swiss and Holstein cattle breeds , 2020, Animal biotechnology.

[7]  B. Brenner,et al.  Hypertrophic cardiomyopathy MYH7-mutation R723G alters mRNA secondary structure. , 2019, Physiological genomics.

[8]  S. H. Lee,et al.  Validation Study of SNPs in CAPN1-CAST Genes on the Tenderness of Muscles (Longissimus thoracis and Semimembranosus) in Hanwoo (Korean Cattle) , 2019, Animals : an open access journal from MDPI.

[9]  A. Junkuszew,et al.  Association of CAST gene polymorphism with carcass value and meat quality in two synthetic lines of sheep. , 2019, Meat science.

[10]  L Pannier,et al.  Factors affecting lamb eating quality and the potential for their integration into an MSA sheepmeat grading model. , 2018, Meat science.

[11]  A. M. Goswami α-Adducin nsSNPs affect mRNA secondary structure, protein modification and stability , 2018, Meta Gene.

[12]  M. Ladeira,et al.  Review: Nutrigenomics of marbling and fatty acid profile in ruminant meat. , 2018, Animal : an international journal of animal bioscience.

[13]  Allison J. Taggart,et al.  The effects of structure on pre-mRNA processing and stability. , 2017, Methods.

[14]  P. Zambonelli,et al.  Association study between single nucleotide polymorphisms in porcine genes and pork quality traits for fresh consumption and processing into Italian dry-cured ham. , 2017, Meat science.

[15]  N. Shoji,et al.  Genetic relationships between meat quality traits and fatty acid composition in Japanese black cattle. , 2017, Animal science journal = Nihon chikusan Gakkaiho.

[16]  J. Estany,et al.  Genetic Marker Discovery in Complex Traits: A Field Example on Fat Content and Composition in Pigs , 2016, International journal of molecular sciences.

[17]  Zhao Su,et al.  Genome-Wide Analysis of RNA Secondary Structure. , 2016, Annual review of genetics.

[18]  F. Ariza,et al.  Association of single nucleotide polymorphisms in CAPN1, CAST and MB genes with meat color of Brahman and crossbreed cattle. , 2016, Meat science.

[19]  H. Kose,et al.  Association of the expression levels in the longissimus muscle and a SNP in the CDC10 gene with marbling in Japanese Black beef cattle. , 2015, Meat science.

[20]  S. McNeill Inclusion of red meat in healthful dietary patterns. , 2014, Meat science.

[21]  K. Piórkowska,et al.  Association of calpastatin gene polymorphisms and meat quality traits in pig. , 2014, Meat science.

[22]  D. Pethick,et al.  Animal factors affecting the meat quality of Australian lamb meat. , 2014, Meat science.

[23]  J. Calvo,et al.  A new single nucleotide polymorphism in the calpastatin (CAST) gene associated with beef tenderness. , 2014, Meat science.

[24]  M. Gottesman,et al.  MDR1 synonymous polymorphisms alter transporter specificity and protein stability in a stable epithelial monolayer. , 2014, Cancer research.

[25]  D. Mozaffarian,et al.  Processing of meats and cardiovascular risk: time to focus on preservatives , 2013, BMC Medicine.

[26]  C. Kimchi-Sarfaty,et al.  Understanding the contribution of synonymous mutations to human disease , 2011, Nature Reviews Genetics.

[27]  D. Gilroy,et al.  Old and new generation lipid mediators in acute inflammation and resolution. , 2011, Progress in lipid research.

[28]  S. Lonergan,et al.  Biochemistry of postmortem muscle - lessons on mechanisms of meat tenderization. , 2010, Meat science.

[29]  P. Greenwood,et al.  Genetic and environmental effects on meat quality. , 2010, Meat science.

[30]  P. Sellier,et al.  Genetic parameters for tissue and fatty acid composition of backfat, perirenal fat and longissimus muscle in Large White and Landrace pigs. , 2010, Animal : an international journal of animal bioscience.

[31]  P. Buttery,et al.  Tenderness--an enzymatic view. , 2010, Meat science.

[32]  Liuda Ziaugra,et al.  SNP Genotyping Using the Sequenom MassARRAY iPLEX Platform , 2009, Current protocols in human genetics.

[33]  Thomas D. Schmittgen,et al.  Analyzing real-time PCR data by the comparative CT method , 2008, Nature Protocols.

[34]  A. Fisher,et al.  Fat deposition, fatty acid composition and meat quality: A review. , 2008, Meat science.

[35]  Lippincott-Schwartz,et al.  Supporting Online Material Materials and Methods Som Text Figs. S1 to S8 Table S1 Movies S1 to S3 a " Silent " Polymorphism in the Mdr1 Gene Changes Substrate Specificity Corrected 30 November 2007; See Last Page , 2022 .

[36]  G. Geesink,et al.  Contribution of postmortem muscle biochemistry to the delivery of consistent meat quality with particular focus on the calpain system. , 2006, Meat science.

[37]  H. Biesalski,et al.  Meat as a component of a healthy diet - are there any risks or benefits if meat is avoided in the diet? , 2005, Meat science.

[38]  M. Raponi,et al.  Synonymous mutations in CFTR exon 12 affect splicing and are not neutral in evolution. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[39]  Lin He,et al.  SHEsis, a powerful software platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci , 2005, Cell Research.

[40]  Mark Daly,et al.  Haploview: analysis and visualization of LD and haplotype maps , 2005, Bioinform..

[41]  D. P. L. Fiego,et al.  Influence of genetic type, live weight at slaughter and carcass fatness on fatty acid composition of subcutaneous adipose tissue of raw ham in the heavy pig. , 2005, Meat science.

[42]  D. Turner,et al.  Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[43]  N. Saitou,et al.  Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor. , 2003, Human molecular genetics.

[44]  S. Shackelford,et al.  Meat tenderness and muscle growth: is there any relationship? , 2002, Meat science.

[45]  H. Kawasaki,et al.  All four repeating domains of the endogenous inhibitor for calcium-dependent protease independently retain inhibitory activity. Expression of the cDNA fragments in Escherichia coli. , 1988, The Journal of biological chemistry.

[46]  J. Wood,et al.  20 – FAT DEPOSITION AND THE QUALITY OF FAT TISSUE IN MEAT ANIMALS , 1984 .

[47]  M. Nei,et al.  Sampling variances of heterozygosity and genetic distance. , 1974, Genetics.