Genome-wide functional annotation of dual-specificity protein- and lipid-binding modules that regulate protein interactions.

[1]  W. Cho,et al.  In Situ Quantitative Imaging of Cellular Lipids Using Molecular Sensors , 2011, Nature chemistry.

[2]  N. Bhardwaj,et al.  The PDZ2 domain of zonula occludens-1 and -2 is a phosphoinositide binding domain , 2009, Cellular and Molecular Life Sciences.

[3]  Wei Feng,et al.  Organization and dynamics of PDZ-domain-related supramodules in the postsynaptic density , 2009, Nature Reviews Neuroscience.

[4]  Tobias Meyer,et al.  Comprehensive identification of PIP3-regulated PH domains from C. elegans to H. sapiens by model prediction and live imaging. , 2008, Molecular cell.

[5]  K. Morikawa,et al.  Structural insights into the PIP2 recognition by syntenin-1 PDZ domain. , 2008, Biochemical and biophysical research communications.

[6]  M. Lemmon,et al.  Membrane recognition by phospholipid-binding domains , 2008, Nature Reviews Molecular Cell Biology.

[7]  Hao Wu,et al.  PDZ domains of Par-3 as potential phosphoinositide signaling integrators. , 2007, Molecular cell.

[8]  Hui Lu,et al.  MeTaDoR: a comprehensive resource for membrane targeting domains and their host proteins , 2007, Bioinform..

[9]  Jun Xia,et al.  Clustering and synaptic targeting of PICK1 requires direct interaction between the PDZ domain and lipid membranes , 2007, The EMBO journal.

[10]  Jiunn R Chen,et al.  PDZ Domain Binding Selectivity Is Optimized Across the Mouse Proteome , 2007, Science.

[11]  Pietro De Camilli,et al.  Phosphoinositides in cell regulation and membrane dynamics , 2006, Nature.

[12]  D. Murray,et al.  The role of electrostatics in protein-membrane interactions. , 2006, Biochimica et biophysica acta.

[13]  D. Lambright,et al.  Membrane and juxtamembrane targeting by PH and PTB domains. , 2006, Biochimica et biophysica acta.

[14]  P. Zimmermann.  The prevalence and significance of PDZ domain-phosphoinositide interactions. , 2006, Biochimica et biophysica acta.

[15]  W. Lim,et al.  Domains, motifs, and scaffolds: the role of modular interactions in the evolution and wiring of cell signaling circuits. , 2006, Annual review of biochemistry.

[16]  Nitin Bhardwaj,et al.  Structural bioinformatics prediction of membrane-binding proteins. , 2006, Journal of molecular biology.

[17]  W. Cho.  Building Signaling Complexes at the Membrane , 2006, Science's STKE.

[18]  D. Murray,et al.  Plasma membrane phosphoinositide organization by protein electrostatics , 2005, Nature.

[19]  N. Bhardwaj,et al.  Kernel-based machine learning protocol for predicting DNA-binding proteins , 2005, Nucleic acids research.

[20]  이혜영,et al.  The phox homology domain of Phospholipase D activates dynamin GTPase activity and accelerates EGFR endocytosis , 2005 .

[21]  A. Neiman,et al.  A Membrane Binding Domain in the Ste5 Scaffold Synergizes with Gβγ Binding to Control Localization and Signaling in Pheromone Response , 2005 .

[22]  Wonhwa Cho,et al.  Membrane-protein interactions in cell signaling and membrane trafficking. , 2005, Annual review of biophysics and biomolecular structure.

[23]  Karthikeyan Diraviyam,et al.  The Molecular Basis of the Differential Subcellular Localization of FYVE Domains* , 2004, Journal of Biological Chemistry.

[24]  D. Lambright,et al.  Membrane Recognition and Targeting by Lipid-Binding Domains , 2003, Science's STKE.

[25]  Fei Long,et al.  Contrasting Membrane Interaction Mechanisms of AP180 N-terminal Homology (ANTH) and Epsin N-terminal Homology (ENTH) Domains* , 2003, Journal of Biological Chemistry.

[26]  T. Pawson,et al.  Assembly of Cell Regulatory Systems Through Protein Interaction Domains , 2003, Science.

[27]  P. Burbelo,et al.  The RhoA-binding protein, Rhophilin-2, Regulates Actin Cytoskeleton Organization* , 2002, The Journal of Biological Chemistry.

[28]  Joël Vandekerckhove,et al.  PIP(2)-PDZ domain binding controls the association of syntenin with the plasma membrane. , 2002, Molecular cell.

[29]  W. Cho,et al.  Membrane binding assays for peripheral proteins. , 2001, Analytical biochemistry.

[30]  W. Cho,et al.  Differential roles of ionic, aliphatic, and aromatic residues in membrane-protein interactions: a surface plasmon resonance study on phospholipases A2. , 2001, Biochemistry.

[31]  J Schultz,et al.  SMART, a simple modular architecture research tool: identification of signaling domains. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[32]  J. C. Pratt,et al.  Evidence for a requirement for both phospholipid and phosphotyrosine binding via the Shc phosphotyrosine-binding domain in vivo , 1997, Molecular and cellular biology.

[33]  K. Fujisawa,et al.  Protein Kinase N (PKN) and PKN-Related Protein Rhophilin as Targets of Small GTPase Rho , 1996, Science.

[34]  A. Petros,et al.  Structure and ligand recognition of the phosphotyrosine binding domain of Shc , 1995, Nature.

[35]  T. Kawakami,et al.  The pleckstrin homology domain of Bruton tyrosine kinase interacts with protein kinase C. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[36]  M. Poo,et al.  Rates of membrane-associated reactions: reduction of dimensionality revisited , 1986, The Journal of cell biology.

[37]  A. Neiman,et al.  A membrane binding domain in the ste5 scaffold synergizes with gbetagamma binding to control localization and signaling in pheromone response. , 2005, Molecular cell.

[38]  Barry Honig,et al.  GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences. , 2003, Methods in enzymology.

[39]  M. Sheng,et al.  PDZ domains and the organization of supramolecular complexes. , 2001, Annual review of neuroscience.

[40]  S. White,et al.  Protein folding in membranes: determining energetics of peptide-bilayer interactions. , 1998, Methods in enzymology.

[41]  D. Bray,et al.  Signaling complexes: biophysical constraints on intracellular communication. , 1998, Annual review of biophysics and biomolecular structure.