Sharing Structure and Function in Biological Design with SBOL 2.0.
暂无分享,去创建一个
Zhen Zhang | Jacob Beal | Matthew R. Pocock | Bryan Bartley | Raik Grünberg | Goksel Misirli | Ernst Oberortner | Anil Wipat | Chris J Myers | Matthew Pocock | Curtis Madsen | Tramy Nguyen | Nicholas Roehner | Michael Bissell | Zach Zundel | Michael Zhang | Herbert M Sauro | Douglas Densmore | Bryan A. Bartley | Kevin Clancy | John H Gennari | H. Sauro | Tramy Nguyen | D. Densmore | J. Beal | Kevin Clancy | Ernst Oberortner | Nicholas Roehner | A. Wipat | J. Gennari | C. Myers | C. Madsen | Michael Zhang | Zhen Zhang | Z. Zundel | Mike Bissell | Goksel Misirli | Raik Grünberg
[1] D. Lipman,et al. Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[2] R. Weiss,et al. Automatic Compilation from High-Level Biologically-Oriented Programming Language to Genetic Regulatory Networks , 2011, PloS one.
[3] Michael Bissell,et al. Genotype Specification Language. , 2016, ACS synthetic biology.
[4] Christopher A. Voigt,et al. Genomic Mining of Prokaryotic Repressors for Orthogonal Logic Gates , 2013, Nature chemical biology.
[5] Ernst Oberortner,et al. A Rule-Based Design Specification Language for Synthetic Biology , 2014, ACM J. Emerg. Technol. Comput. Syst..
[6] Chris J Myers,et al. A methodology to annotate systems biology markup language models with the synthetic biology open language. , 2014, ACS synthetic biology.
[7] Matthew R. Pocock,et al. SBOL Visual: A Graphical Language for Genetic Designs , 2015, PLoS biology.
[8] Michael Hucka,et al. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core , 2010, J. Integr. Bioinform..
[9] Chris J Myers,et al. A Converter from the Systems Biology Markup Language to the Synthetic Biology Open Language. , 2016, ACS synthetic biology.
[10] Zhen Zhang,et al. Generating Systems Biology Markup Language Models from the Synthetic Biology Open Language. , 2015, ACS synthetic biology.
[11] R. Weiss,et al. Cancer Cells Multi-Input RNAi-Based Logic Circuit for Identification of Specific , 2011 .
[12] Michael B Elowitz,et al. Synthetic biology of multicellular systems: new platforms and applications for animal cells and organisms. , 2014, ACS synthetic biology.
[13] W. J. Hedley,et al. A short introduction to CellML , 2001, Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences.
[14] Kwang-Hyun Cho,et al. Encyclopedia of Systems Biology , 2013, Springer New York.
[15] G. Stephanopoulos,et al. Metabolic engineering: past and future. , 2013, Annual review of chemical and biomolecular engineering.
[16] Chris J. Myers,et al. Tablet—next generation sequence assembly visualization , 2009, Bioinform..
[17] C Burks,et al. The GenBank genetic sequence data bank. , 1988, Nucleic acids research.
[18] Timothy S. Ham,et al. Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools , 2012, Nucleic acids research.
[19] Christopher A. Voigt,et al. Genetic circuit design automation , 2016, Science.
[20] Douglas Densmore,et al. Interactive assembly algorithms for molecular cloning , 2014, Nature Methods.
[21] Yeo Joon Yoon,et al. Reinvigorating natural product combinatorial biosynthesis with synthetic biology. , 2015, Nature chemical biology.
[22] Jacob Beal,et al. Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0 , 2018, J. Integr. Bioinform..
[23] Prashant Vaidyanathan,et al. A Framework for Genetic Logic Synthesis , 2015, Proceedings of the IEEE.
[24] Allan Kuchinsky,et al. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology , 2014, Nature Biotechnology.
[25] James W. Fickett,et al. The GenBank genetic sequence databank , 1986, Nucleic Acids Res..
[26] Zhang Yan,et al. Recent advances in synthetic biology , 2015 .
[27] Emma M. B. Weeding,et al. Eugene – A Domain Specific Language for Specifying and Constraining Synthetic Biological Parts, Devices, and Systems , 2011, PloS one.
[28] E. Prud hommeaux,et al. SPARQL query language for RDF , 2011 .
[29] Zhen Zhang,et al. Synthetic Biology Open Language (SBOL) Version 2.0.0 , 2015, J. Integr. Bioinform..
[30] Christopher A. Voigt,et al. Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca , 2012, Proceedings of the National Academy of Sciences.
[31] A. Arkin,et al. Contextualizing context for synthetic biology – identifying causes of failure of synthetic biological systems , 2012, Biotechnology journal.
[32] T. Ellis,et al. Bricks and blueprints: methods and standards for DNA assembly , 2015, Nature Reviews Molecular Cell Biology.
[33] R. Durbin,et al. The Sequence Ontology: a tool for the unification of genome annotations , 2005, Genome Biology.
[34] Manuel Porcar,et al. iGEM 2.0—refoundations for engineering biology , 2014, Nature Biotechnology.
[35] D. Endy. Foundations for engineering biology , 2005, Nature.
[36] Y. Benenson. Biomolecular computing systems: principles, progress and potential , 2012, Nature Reviews Genetics.
[37] Jacob Beal,et al. Proposed data model for the next version of the synthetic biology open language. , 2015, ACS synthetic biology.
[38] William J. Slattery. An index of U.S. voluntary engineering standards : covering those standards, specifications, test methods, and recommended practices issued by National Standardization Organizations in the United States , 1971 .
[39] Zhen Zhang,et al. libSBOLj 2.0: A Java Library to Support SBOL 2.0 , 2015, IEEE Life Sciences Letters.
[40] Christopher A. Voigt,et al. Genetic programs constructed from layered logic gates in single cells , 2012, Nature.
[41] Gary D Bader,et al. BioPAX – A community standard for pathway data sharing , 2010, Nature Biotechnology.
[42] Edda Klipp,et al. Systems Biology , 1994 .
[43] Rodrigo Weber dos Santos,et al. CellML and associated tools and techniques , 2008, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[44] Christopher A. Voigt,et al. Characterization of 582 natural and synthetic terminators and quantification of their design constraints , 2013, Nature Methods.
[45] Hiroaki Kitano,et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models , 2003, Bioinform..
[46] Rainer Breitling,et al. Steps towards the synthetic biology of polyketide biosynthesis , 2014, FEMS microbiology letters.
[47] Ieee Standards Board. IEEE standard verilog hardware description language , 2001 .
[48] Christopher A. Voigt,et al. Design of orthogonal genetic switches based on a crosstalk map of σs, anti-σs, and promoters , 2013, Molecular Systems Biology.
[49] Galdzicki Michal,et al. SBOL: A community standard for communicating designs in synthetic biology , 2013 .