Algorithms for Large-Scale Clustering and Assembly of Biological Sequence Data
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Srinivas Aluru | Anantharaman Kalyanaraman | Scott J. Emrich | S. Aluru | A. Kalyanaraman | S. Emrich
[1] J Quackenbush,et al. Enrichment of Gene-Coding Sequences in Maize by Genome Filtration , 2003, Science.
[2] Ramesh Hariharan. Optimal Parallel Suffix Tree Construction , 1997, J. Comput. Syst. Sci..
[3] E. D. Earle,et al. Nuclear DNA content of some important plant species , 2007, Plant Molecular Biology Reporter.
[4] Robert E. Tarjan,et al. Efficiency of a Good But Not Linear Set Union Algorithm , 1972, JACM.
[5] J. Bennetzen,et al. National Science Foundation-sponsored workshop report. Maize genome sequencing project. , 2001, Plant physiology.
[6] James W. Fickett,et al. Fast optimal alignment , 1984, Nucleic Acids Res..
[7] Timothy B. Stockwell,et al. The Sequence of the Human Genome , 2001, Science.
[8] P. Pevzner,et al. An Eulerian path approach to DNA fragment assembly , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[9] Srinivas Aluru,et al. Space and time efficient parallel algorithms and software for EST clustering , 2003, IEEE Trans. Parallel Distributed Syst..
[10] Michele Morgante,et al. Evolution of DNA Sequence Nonhomologies among Maize Inbredsw⃞ , 2005, The Plant Cell Online.
[11] J. V. Moran,et al. Initial sequencing and analysis of the human genome. , 2001, Nature.
[12] J. Zhang,et al. Methods for comparing a DNA sequence with a protein sequence , 1996, Comput. Appl. Biosci..
[13] Nathan M. Springer,et al. Utility of Different Gene Enrichment Approaches Toward Identifying and Sequencing the Maize Gene Space1[w] , 2004, Plant Physiology.
[14] William R. Pearson,et al. Aligning a DNA sequence with a protein sequence , 1997, RECOMB '97.
[15] Srinivas Aluru,et al. Space-conserving optimal DNA-protein alignment , 2004 .
[16] S. Salzberg,et al. An optimized protocol for analysis of EST sequences. , 2000, Nucleic acids research.
[17] Lukas Wagner,et al. A Greedy Algorithm for Aligning DNA Sequences , 2000, J. Comput. Biol..
[18] E. Lander,et al. Genomic mapping by fingerprinting random clones: a mathematical analysis. , 1988, Genomics.
[19] S. Dike,et al. Maize Genome Sequencing by Methylation Filtration , 2003, Science.
[20] Robert A. Martienssen,et al. Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome , 1999, Nature Genetics.
[21] D. Mccormick. Sequence the Human Genome , 1986, Bio/Technology.
[22] John Quackenbush,et al. TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets , 2003, Bioinform..
[23] Srinivas Aluru,et al. A strategy for assembling the maize (Zea mays L.) genome , 2004, Bioinform..
[24] M. Rhoades,et al. The early years of maize genetics. , 1984, Annual review of genetics.
[25] Jean L. Chang,et al. An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[26] Yinan Yuan,et al. High-Cot sequence analysis of the maize genome. , 2003, The Plant journal : for cell and molecular biology.
[27] Osamu Gotoh,et al. Homology-based gene structure prediction: simplified matching algorithm using a translated codon (tron) and improved accuracy by allowing for long gaps , 2000, Bioinform..
[28] Huanming Yang,et al. A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica) , 2002, Science.
[29] W Richard McCombie,et al. Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. , 2005, Genome research.
[30] J. Mullikin,et al. The phusion assembler. , 2003, Genome research.
[31] Gad M. Landau,et al. Parallel construction of a suffix tree with applications , 1988, Algorithmica.
[32] Srinivas Aluru,et al. Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[33] A. Oliphant,et al. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). , 2002, Science.