论文信息 - Automatic Generation of Parallel Cache-Efficient Code Implementing Zuker's RNA Folding - 字舞流文

Automatic Generation of Parallel Cache-Efficient Code Implementing Zuker's RNA Folding

Marek Palkowski | Wlodzimierz Bielecki | Mateusz Gruzewski

[1] Marek Palkowski,et al. Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three Sequences , 2018, J. Comput. Biol..

[2] Uday Bondhugula,et al. Tiling for Dynamic Scheduling , 2014 .

[3] Marek Palkowski,et al. Parallel tiled Nussinov RNA folding loop nest generated using both dependence graph transitive closure and loop skewing , 2017, BMC Bioinformatics.

[4] Peter F. Stadler,et al. ViennaRNA Package 2.0 , 2011, Algorithms for Molecular Biology.

[5] Sartaj Sahni,et al. Multicore and GPU algorithms for Nussinov RNA folding , 2014, BMC Bioinformatics.

[6] Uday Bondhugula,et al. A practical automatic polyhedral parallelizer and locality optimizer , 2008, PLDI '08.

[7] Sartaj Sahni,et al. Cache and energy efficient algorithms for Nussinov’s RNA Folding , 2017, BMC Bioinformatics.