Tumour Relapse Prediction Using Multiparametric MR Data Recorded during Follow-Up of GBM Patients

Purpose. We have focused on finding a classifier that best discriminates between tumour progression and regression based on multiparametric MR data retrieved from follow-up GBM patients. Materials and Methods. Multiparametric MR data consisting of conventional and advanced MRI (perfusion, diffusion, and spectroscopy) were acquired from 29 GBM patients treated with adjuvant therapy after surgery over a period of several months. A 27-feature vector was built for each time point, although not all features could be obtained at all time points due to missing data or quality issues. We tested classifiers using LOPO method on complete and imputed data. We measure the performance by computing BER for each time point and wBER for all time points. Results. If we train random forests, LogitBoost, or RobustBoost on data with complete features, we can differentiate between tumour progression and regression with 100% accuracy, one time point (i.e., about 1 month) earlier than the date when doctors had put a label (progressive or responsive) according to established radiological criteria. We obtain the same result when training the same classifiers solely on complete perfusion data. Conclusions. Our findings suggest that ensemble classifiers (i.e., random forests and boost classifiers) show promising results in predicting tumour progression earlier than established radiological criteria and should be further investigated.

[1]  Leo Breiman,et al.  Bagging Predictors , 1996, Machine Learning.

[2]  Peter E. Hart,et al.  Nearest neighbor pattern classification , 1967, IEEE Trans. Inf. Theory.

[3]  Leo Breiman,et al.  Random Forests , 2001, Machine Learning.

[4]  C R Bird,et al.  Gliomas: classification with MR imaging. , 1990, Radiology.

[5]  R L Ehman,et al.  Cerebral astrocytomas: histopathologic correlation of MR and CT contrast enhancement with stereotactic biopsy. , 1988, Radiology.

[6]  B. Bobek-Billewicz,et al.  Differentiation between brain tumor recurrence and radiation injury using perfusion, diffusion-weighted imaging and MR spectroscopy. , 2010, Folia neuropathologica.

[7]  R. Sciot,et al.  Postoperative Adjuvant Dendritic Cell–Based Immunotherapy in Patients with Relapsed Glioblastoma Multiforme , 2008, Clinical Cancer Research.

[8]  H. Lanfermann,et al.  Clinical application of proton magnetic resonance spectroscopy in the diagnosis of intracranial mass lesions , 2002, Neuroradiology.

[9]  Xiaojin Zhu,et al.  Introduction to Semi-Supervised Learning , 2009, Synthesis Lectures on Artificial Intelligence and Machine Learning.

[10]  J. Debbins,et al.  Optimized Preload Leakage-Correction Methods to Improve the Diagnostic Accuracy of Dynamic Susceptibility-Weighted Contrast-Enhanced Perfusion MR Imaging in Posttreatment Gliomas , 2010, American Journal of Neuroradiology.

[11]  Gang Niu,et al.  Squared-loss Mutual Information Regularization: A Novel Information-theoretic Approach to Semi-supervised Learning , 2013, ICML.

[12]  T.,et al.  Training Feedforward Networks with the Marquardt Algorithm , 2004 .

[13]  K. Schmainda,et al.  Using rCBV to Distinguish Radiation Necrosis from Tumor Recurrence in Malignant Gliomas , 2005 .

[14]  Wei-Yin Loh,et al.  Classification and regression trees , 2011, WIREs Data Mining Knowl. Discov..

[15]  Sabine Van Huffel,et al.  Integrating diffusion kurtosis imaging, dynamic susceptibility-weighted contrast-enhanced MRI, and short echo time chemical shift imaging for grading gliomas. , 2014, Neuro-oncology.

[16]  Susan M. Chang,et al.  Updated response assessment criteria for high-grade gliomas: response assessment in neuro-oncology working group. , 2010, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[17]  Zhi-Hua Zhou,et al.  Towards Making Unlabeled Data Never Hurt , 2011, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[18]  Yoav Freund,et al.  A decision-theoretic generalization of on-line learning and an application to boosting , 1997, EuroCOLT.

[19]  S. Green,et al.  Glioblastoma multiforme and anaplastic astrocytoma pathologic criteria and prognostic implications , 1985, Cancer.

[20]  J. Rees Advances in magnetic resonance imaging of brain tumours , 2003, Current opinion in neurology.

[21]  Corinna Cortes,et al.  Support-Vector Networks , 1995, Machine Learning.

[22]  Sabine Van Huffel,et al.  Exploiting spatial information to estimate metabolite levels in two‐dimensional MRSI of heterogeneous brain lesions , 2011, NMR in biomedicine.

[23]  Nello Cristianini,et al.  An Introduction to Support Vector Machines and Other Kernel-based Learning Methods , 2000 .

[24]  J. Helpern,et al.  Diffusional kurtosis imaging: The quantification of non‐gaussian water diffusion by means of magnetic resonance imaging , 2005, Magnetic resonance in medicine.

[25]  Ed X. Wu,et al.  Towards better MR characterization of neural tissues using directional diffusion kurtosis analysis , 2008, NeuroImage.

[26]  Uwe Himmelreich,et al.  MR perfusion and diffusion imaging in the follow-up of recurrent glioblastoma treated with dendritic cell immunotherapy: a pilot study , 2011, Neuroradiology.

[27]  J. Friedman Special Invited Paper-Additive logistic regression: A statistical view of boosting , 2000 .

[28]  P. Flamen,et al.  Surgery and adjuvant dendritic cell-based tumour vaccination for patients with relapsed malignant glioma, a feasibility study , 2004, British Journal of Cancer.

[29]  R. Sciot,et al.  Transient local response and persistent tumor control in a child with recurrent malignant glioma: treatment with combination therapy including dendritic cell therapy. Case report. , 2004, Journal of neurosurgery.

[30]  Taghi M. Khoshgoftaar,et al.  RUSBoost: Improving classification performance when training data is skewed , 2008, 2008 19th International Conference on Pattern Recognition.

[31]  Eric Achten,et al.  Optimal Experimental Design for Diffusion Kurtosis Imaging , 2010, IEEE Transactions on Medical Imaging.

[32]  Sabine Van Huffel,et al.  Reproducibility of rapid short echo time CSI at 3 tesla for clinical applications , 2013, Journal of magnetic resonance imaging : JMRI.

[33]  M. Berger,et al.  Differentiation of recurrent glioblastoma multiforme from radiation necrosis after external beam radiation therapy with dynamic susceptibility-weighted contrast-enhanced perfusion MR imaging. , 2009, Radiology.

[34]  Frank Rosenblatt,et al.  PRINCIPLES OF NEURODYNAMICS. PERCEPTRONS AND THE THEORY OF BRAIN MECHANISMS , 1963 .

[35]  Soonmee Cha,et al.  Imaging Glioblastoma Multiforme , 2003, Cancer journal.

[36]  Johan A. K. Suykens,et al.  Least Squares Support Vector Machines , 2002 .

[37]  R. Lippmann,et al.  An introduction to computing with neural nets , 1987, IEEE ASSP Magazine.

[38]  Michalis E. Zervakis,et al.  Strengths and Weaknesses of 1.5T and 3T MRS Data in Brain Glioma Classification , 2011, IEEE Transactions on Information Technology in Biomedicine.

[39]  Mohammad Bagher Menhaj,et al.  Training feedforward networks with the Marquardt algorithm , 1994, IEEE Trans. Neural Networks.

[40]  Johan A. K. Suykens,et al.  LS-SVMlab Toolbox User's Guide , 2010 .

[41]  B. Nan,et al.  Differentiation between brain tumor recurrence and radiation injury using MR spectroscopy. , 2005, AJR. American journal of roentgenology.

[42]  Johan A. K. Suykens,et al.  Least Squares Support Vector Machine Classifiers , 1999, Neural Processing Letters.

[43]  B. Shadbolt,et al.  Increasing incidence of glioblastoma multiforme and meningioma, and decreasing incidence of Schwannoma (2000–2008): Findings of a multicenter Australian study , 2011, Surgical neurology international.

[44]  Leo Breiman,et al.  Bagging Predictors , 1996, Machine Learning.

[45]  Alexander Zien,et al.  Semi-Supervised Classification by Low Density Separation , 2005, AISTATS.

[46]  D van Ormondt,et al.  Cramér–Rao bounds: an evaluation tool for quantitation , 2001, NMR in biomedicine.

[47]  R. Kreis Issues of spectral quality in clinical 1H‐magnetic resonance spectroscopy and a gallery of artifacts , 2004, NMR in biomedicine.

[48]  Leland S. Hu,et al.  Reevaluating the imaging definition of tumor progression: perfusion MRI quantifies recurrent glioblastoma tumor fraction, pseudoprogression, and radiation necrosis to predict survival , 2012, Neuro-oncology.

[49]  Martin J. van den Bent,et al.  Radiotherapy plus concomitant and adjuvant temozolomide for glioblastoma. , 2005, The New England journal of medicine.

[50]  J. Keller,et al.  Long-term survival of patients suffering from glioblastoma multiforme treated with tumor-treating fields , 2012, World Journal of Surgical Oncology.

[51]  Jan Sijbers,et al.  Gliomas: diffusion kurtosis MR imaging in grading. , 2012, Radiology.

[52]  Stephen T. C. Wong,et al.  Support vector machine multiparametric MRI identification of pseudoprogression from tumor recurrence in patients with resected glioblastoma , 2011, Journal of magnetic resonance imaging : JMRI.

[53]  Kurt Hornik,et al.  Multilayer feedforward networks are universal approximators , 1989, Neural Networks.

[54]  S. Van Cauter,et al.  Dendritic Cell Therapy of High‐Grade Gliomas , 2009, Brain pathology.

[55]  Yoav Freund,et al.  A more robust boosting algorithm , 2009, 0905.2138.