Proteins H/ACA Small Nucleolar RNA-Associated Rnt1p Is Required for the Nuclear Import of A Physical Interaction between Gar1p and

, the double-stranded RNA nuclease Rnt1p andthe H/ACA snoRNA pseudouridylase complex participate in the transformation of the nascent pre-rRNAtranscript into 35S pre-rRNA. Here we demonstrate the binding of a component of the H/ACA complex (Gar1p)to Rnt1p in vivo and in vitro in the absence of other factors. In vitro, Rnt1p binding to Gar1p is mutuallyexclusive of its RNA binding and cleavage activities. Mutations in Rnt1p that disrupt Gar1p binding do notinhibit RNA cleavage in vitro but slow RNA processing, prevent nucleolar localization of H/ACA snoRNA-associated proteins, and reduce pre-rRNA pseudouridylation in vivo. These results demonstrate colocalizationof various components of the rRNA maturation complex and suggest a mechanism that links rRNA pseudouri-dylation and cleavage factors.

[1]  A. Fatica,et al.  Release of U18 snoRNA from its host intron requires interaction of Nop1p with the Rnt1p endonuclease , 2001, The EMBO journal.

[2]  T. Geerlings,et al.  The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5'-->3' exonucleases. , 2000, RNA.

[3]  M. Ares,et al.  Substrate recognition by a eukaryotic RNase III: the double-stranded RNA-binding domain of Rnt1p selectively binds RNA containing a 5'-AGNN-3' tetraloop. , 2000, RNA.

[4]  W. Filipowicz,et al.  Rcl1p, the yeast protein similar to the RNA 3′‐phosphate cyclase, associates with U3 snoRNP and is required for 18S rRNA biogenesis , 2000, The EMBO journal.

[5]  M. Dundr,et al.  The nucleolus: an old factory with unexpected capabilities. , 2000, Trends in cell biology.

[6]  V. Solovyev,et al.  A novel type of RNase III family proteins in eukaryotes. , 2000, Gene.

[7]  Sherif Abou Elela,et al.  The N-Terminal Domain That Distinguishes Yeast from Bacterial RNase III Contains a Dimerization Signal Required for Efficient Double-Stranded RNA Cleavage , 2000, Molecular and Cellular Biology.

[8]  R. Parker,et al.  Yeast Exosome Mutants Accumulate 3′-Extended Polyadenylated Forms of U4 Small Nuclear RNA and Small Nucleolar RNAs , 2000, Molecular and Cellular Biology.

[9]  Maurille J. Fournier,et al.  Point Mutations in Yeast CBF5 Can Abolish In Vivo Pseudouridylation of rRNA , 1999, Molecular and Cellular Biology.

[10]  P. Mitchell,et al.  Functions of the exosome in rRNA, snoRNA and snRNA synthesis , 1999, The EMBO journal.

[11]  D. Tollervey,et al.  Yeast Rnt1p is required for cleavage of the pre-ribosomal RNA in the 3' ETS but not the 5' ETS. , 1999, RNA.

[12]  A. Nicholson Function, mechanism and regulation of bacterial ribonucleases. , 1999, FEMS microbiology reviews.

[13]  P. Legrain,et al.  Yeast RNase III as a key processing enzyme in small nucleolar RNAs metabolism. , 1998, Journal of molecular biology.

[14]  Stephen J. Elledge,et al.  The univector plasmid-fusion system, a method for rapid construction of recombinant DNA without restriction enzymes , 1998, Current Biology.

[15]  M. Mann,et al.  Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure. , 1998, RNA.

[16]  M. Caizergues-Ferrer,et al.  Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs , 1998, The EMBO journal.

[17]  P. Legrain,et al.  Processing of a dicistronic small nucleolar RNA precursor by the RNA endonuclease Rnt1 , 1998, The EMBO journal.

[18]  M. Ares,et al.  Depletion of yeast RNase III blocks correct U2 3′ end formation and results in polyadenylated but functional U2 snRNA , 1998, The EMBO journal.

[19]  C. Bagni,et al.  Gar1p Binds to the Small Nucleolar RNAs snR10 and snR30 in Vitro through a Nontypical RNA Binding Element* , 1998, The Journal of Biological Chemistry.

[20]  D. Tollervey,et al.  The role of the 3' external transcribed spacer in yeast pre-rRNA processing. , 1998, Journal of molecular biology.

[21]  D. Tollervey,et al.  The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. , 1998, Genes & development.

[22]  Sherif Abou Elela,et al.  Alternative 3'-end processing of U5 snRNA by RNase III. , 1997, Genes & development.

[23]  M. Caizergues-Ferrer,et al.  A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs , 1997, The EMBO journal.

[24]  J. Bachellerie,et al.  Guiding ribose methylation of rRNA. , 1997, Trends in biochemical sciences.

[25]  S. Dwight,et al.  Genetic and physical maps of Saccharomyces cerevisiae. , 1997, Methods in enzymology.

[26]  J. Ni,et al.  Small Nucleolar RNAs Direct Site-Specific Synthesis of Pseudouridine in Ribosomal RNA , 1997, Cell.

[27]  E. Craig,et al.  Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. , 1996, Genetics.

[28]  Tamás Kiss,et al.  Site-Specific Ribose Methylation of Preribosomal RNA: A Novel Function for Small Nucleolar RNAs , 1996, Cell.

[29]  D. Frendewey,et al.  Purification and characterization of the Pac1 ribonuclease of Schizosaccharomyces pombe. , 1996, Nucleic acids research.

[30]  B. Séraphin,et al.  Accurate Processing of a Eukaryotic Precursor Ribosomal RNA by Ribonuclease MRP in Vitro , 1996, Science.

[31]  Sherif Abou Elela,et al.  RNase III Cleaves Eukaryotic Preribosomal RNA at a U3 snoRNP-Dependent Site , 1996, Cell.

[32]  C. Bagni,et al.  Identification of a segment of the small nucleolar ribonucleoprotein-associated protein GAR1 that is sufficient for nucleolar accumulation. , 1994, The Journal of biological chemistry.

[33]  Sherif Abou Elela,et al.  Intragenic processing in yeast rRNA is dependent on the 3' external transcribed spacer. , 1994, Journal of molecular biology.

[34]  E. Petfalski,et al.  The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site. , 1994, The EMBO journal.

[35]  D A Clayton,et al.  Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae , 1993, Molecular and cellular biology.

[36]  Gerald R. Fink,et al.  Guide to yeast genetics and molecular biology , 1993 .

[37]  D. Tollervey,et al.  Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis , 1993, Molecular and cellular biology.

[38]  G. F. Joyce,et al.  Randomization of genes by PCR mutagenesis. , 1992, PCR methods and applications.

[39]  D. Tollervey,et al.  GAR1 is an essential small nucleolar RNP protein required for pre‐rRNA processing in yeast. , 1992, The EMBO journal.

[40]  Fred Winston,et al.  Methods in Yeast Genetics: A Laboratory Course Manual , 1990 .

[41]  M. Fournier,et al.  Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. , 1990, Molecular and cellular biology.

[42]  D. Tollervey A yeast small nuclear RNA is required for normal processing of pre‐ribosomal RNA. , 1987, The EMBO journal.

[43]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[44]  Ram Reddy,et al.  Structural and functional similarities between MRP and RNase P , 2004, Molecular Biology Reports.

[45]  Sherif Abou Elela,et al.  Purification and characterization of Saccharomyces cerevisiae Rnt1p nuclease. , 2001, Methods in enzymology.

[46]  S. Elledge,et al.  Rapid construction of recombinant DNA by the univector plasmid-fusion system. , 2000, Methods in enzymology.

[47]  D. Tollervey,et al.  Ribosome synthesis in Saccharomyces cerevisiae. , 1999, Annual review of genetics.

[48]  D. Thiele,et al.  Copper ion inducible and repressible promoter systems in yeast. , 1999, Methods in enzymology.

[49]  R. Seipelt,et al.  U1 snRNA is cleaved by RNase III and processed through an Sm site-dependent pathway. , 1999, Nucleic acids research.

[50]  E. Petfalski,et al.  Processing of the yeast pre-rRNA at sites A(2) and A(3) is linked. , 1996, RNA.

[51]  B. Haarer,et al.  Fluorescence microscopy methods for yeast. , 1989, Methods in cell biology.

[52]  E. Harlow,et al.  Antibodies: A Laboratory Manual , 1988 .

[53]  Jeffrey H. Miller Experiments in molecular genetics , 1972 .